Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02006 ATGGAAGGGTGCCATTTACCCAATGAACACGACAATATTAACTCTCTTGAGGAAGAGTTGAATGGAGAGAGTTCAGTGCTACCAGAACTATCTCGGCAAAGTCTTTCTTTTGATTCAGATTTCACTGCCGCAGCCATTATTCCTGGATTGAAAAAGACGGACAAGTTGTCTATCGTTAGCAACACTATCGATTACGTGAAATATCTTCAAAATCGTGTAAGATATTTGGAGGAACAGAACAAGAAGACGGAATCCAAAATGTACTTCAAAAACAACAAACTCAATGCTACTGTTGTTGATGACATGTCAAAGATCTCTGATGGCTTCAATAGACTTACATTTTCCAACGTTGATGCAAGCTTCTCAGGTGAAGATGTAATAATCAAAGTTATCTATAACAAACAAGAGGGCATTGTAACGAAGCTACTGTCCAAGCTTGTAGCTTATGATCTCTCCATAGTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTAAGCATTTCCATCATTGCTAAGGTGAAGCAAAATAAAACTAGAATAGCACTAAATTTGGCATCAACAATGGACGACGAGTCATGGGAAAAATGGTTTTCTGATTTGGAAATGGATGAGTGCCATTTACTGAATGAACACGACAATATTAACTCTCTTGAGGAAGAGTTGAAGGGAGAGAGTTCAGTGCTGCCAGAACTATTTTGGGAAAGTCTTTCATTTGATTCAGATTTCACTGCCGCAGGTACAAGCAACAACATGGGAAATAATGCTTCAACTTTGGAAGAGAACACACAACATGCTTCTAATTCAGAGAAACCAAATTTCTCGTCCTGCATTCTCTCTTTTGAGGACTCCACTACAGTGCCCAATAAAAACTCCAAGAAGGGTAGAACTAGAAACAGTTCTCATTCTCAGTCGCAACAAGATCACATAATCGCTGAGAGGAGGAGGAGAGAGAAACTCGGCACAATGTTCACAGCACTTTCGGCCATTATTCCTGGATTGAAAAAAACAGACAAGCTTTCTATCCTTAACAACGCTGTCGATTACGTGAAATATCTTCAAAATCGTGTAAGAGATTTGGAGGAACATAATAAGAAGACGGAATCCATAATGTGCTTCGAAAACAACAAACCCAATGTTACTGTTGTTGATGACATTTCAAAGATCTCTGATGGCTTAGAAAGACTTACATTTCCCAACGTTGATGCAAGCGTCTCAGGTGAAGATGCAATAATCAGAGTTATTTGTTACAAACGAGATGATATTATAACAAAGCTACTGTCCAAGCTTGCAGCCTATAATCTCTCCATAGTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTAAGCATTTCCATCATTGCTAAGGTGGAATGTGAATTCAGCATGGCAATGGACGACCTTGTGGAAACTTTGAACGAGGATTTGCTGAAATGTTGTAACTTGCAATAG 1455 0.3883 MEGCHLPNEHDNINSLEEELNGESSVLPELSRQSLSFDSDFTAAAIIPGLKKTDKLSIVSNTIDYVKYLQNRVRYLEEQNKKTESKMYFKNNKLNATVVDDMSKISDGFNRLTFSNVDASFSGEDVIIKVIYNKQEGIVTKLLSKLVAYDLSIVCSNVLPFGNSTLSISIIAKVKQNKTRIALNLASTMDDESWEKWFSDLEMDECHLLNEHDNINSLEEELKGESSVLPELFWESLSFDSDFTAAGTSNNMGNNASTLEENTQHASNSEKPNFSSCILSFEDSTTVPNKNSKKGRTRNSSHSQSQQDHIIAERRRREKLGTMFTALSAIIPGLKKTDKLSILNNAVDYVKYLQNRVRDLEEHNKKTESIMCFENNKPNVTVVDDISKISDGLERLTFPNVDASVSGEDAIIRVICYKRDDIITKLLSKLAAYNLSIVCSNVLPFGNSTLSISIIAKVECEFSMAMDDLVETLNEDLLKCCNLQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02006 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 86 IPR036638 GO:0046983
Pumo7g02006 484 Gene3D - 10 94 IPR036638 GO:0046983
Pumo7g02006 484 Coils Coil 13 33 - -
Pumo7g02006 484 PANTHER BHLH TRANSCRIPTION FACTOR 236 479 - -
Pumo7g02006 484 Gene3D - 295 369 IPR036638 GO:0046983
Pumo7g02006 484 Coils Coil 350 370 - -
Pumo7g02006 484 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Pumo7g02006 484 SMART finulus 310 359 IPR011598 GO:0046983
Pumo7g02006 484 SMART finulus 14 75 IPR011598 GO:0046983
Pumo7g02006 484 MobiDBLite consensus disorder prediction 250 307 - -
Pumo7g02006 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 365 IPR036638 GO:0046983
Pumo7g02006 484 Coils Coil 66 86 - -
Pumo7g02006 484 Pfam Helix-loop-helix DNA-binding domain 307 354 IPR011598 GO:0046983
Pumo7g02006 484 MobiDBLite consensus disorder prediction 250 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02006 Pumo-Chr7 54139792 54153784 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02006 196 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.722 1.19e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g02006 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02006 - - ccaj:109790958 274.633