Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02003 ATGGAGCAAAAATGGGTTTCTGTTTTGGACACGAATTACTGTCATTTATTCAGTGAATATGACATGAACTCAGTTGAAGAAGAATGGGAGGGAGAGAATTCAGTGGATCCTCCAGAATTCTCATGGAAAAACCACTCTTCTTATGATGCATATCTCACTAAAGAAAGCACCACCCTTCTAAGCAATTCTTCATCTTTGGAAGAGAACACTGGCTTTGGTATGACAAGTACTCTCCAACCACATGGTTCTCCACAGAATCCAAAGTCTTGCATTCTGTCTTTTGAGGATTCCACTTCAGTGCCAATTACTCCCAAGAAAACAACATGCCAATACCATGGTGAACATTCAAAGGAGACACAAGAAAAGCCACAAAATAGAAGACCCCTCAAGAGGGATAGAACCTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGAAGAGAGAATCTCACCAGAATGTTCATAAGTCTTTCAGCCCTTATTCCAGGCTTGAAAAAGATGGACAAGGCTTCGGTCCTTAACAACGCTGTAGAGTATGTTAAACATCTTCAGCAGCGTGTGAAAGATTTGGAGCAAGAGAACAACAACAAGAAGAGAAAGATAGAATCCATAGGATGCTTCAAAATAAACAAAACCAGTGTTGCTGACGACTCTGATGATAAACCTATGATGATATGTCCCAAAGTTGAAGCAAGAGTCTCAGGAAAAGATGTGCTCATCAGAGTAATGTGTGAGAAGCAAAAGGACATTGTACGCAAGCTACTGGCCAAGCTTGAAGCTCATAATCTCTCCATTGTGTGTAGCAATGTTTTACCTTTTGGGAATTCTGCTCTCAGCATTAACAGCATTGCTAAGATGGACCATGAATTCAGCACGACGGTGGACACGTACGACCTAGTGAAAATGTTGACTGAGGATTTGCTGGAGTGCTGCAAATTGCAACGATAA 954 0.4109 MEQKWVSVLDTNYCHLFSEYDMNSVEEEWEGENSVDPPEFSWKNHSSYDAYLTKESTTLLSNSSSLEENTGFGMTSTLQPHGSPQNPKSCILSFEDSTSVPITPKKTTCQYHGEHSKETQEKPQNRRPLKRDRTSSQTLDHIMAERKRRENLTRMFISLSALIPGLKKMDKASVLNNAVEYVKHLQQRVKDLEQENNNKKRKIESIGCFKINKTSVADDSDDKPMMICPKVEARVSGKDVLIRVMCEKQKDIVRKLLAKLEAHNLSIVCSNVLPFGNSALSINSIAKMDHEFSTTVDTYDLVKMLTEDLLECCKLQR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02003 317 Coils Coil 175 202 - -
Pumo7g02003 317 Gene3D - 134 208 IPR036638 GO:0046983
Pumo7g02003 317 PANTHER BHLH TRANSCRIPTION FACTOR 32 309 - -
Pumo7g02003 317 MobiDBLite consensus disorder prediction 64 140 - -
Pumo7g02003 317 SMART finulus 142 191 IPR011598 GO:0046983
Pumo7g02003 317 MobiDBLite consensus disorder prediction 64 106 - -
Pumo7g02003 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Pumo7g02003 317 Pfam Helix-loop-helix DNA-binding domain 141 186 IPR011598 GO:0046983
Pumo7g02003 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 203 IPR036638 GO:0046983
Pumo7g02003 317 MobiDBLite consensus disorder prediction 110 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02003 Pumo-Chr7 53911982 53914635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02003 4 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.731 7.96e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g02003 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02003 - - gmx:100815351 461.455