Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02001 ATGGATGAGTCATGGGAAAAATGGCTTTCTGATTTGGAAATGGATGAGTTGCATTTGTTCAATGAACACAACATGATTAACTCTCTTGAGGAAGAGTTGAAGGGAGAGATCAATCATCCAGTGCAGCCAGAACTATCTTGGGAAAGCCTTTCTTGTGATTCAATTTTCAATTCTTCAACTTTGGAAGAGAACACACAACATGCTAATTCTTCAAAGAAACCAATTTTTTCTTCCTACATTCTCTCTTTTGAGGACTCCTCTACAGTGCCAAATGTTACCACAAAAACATTTCAATATCATGAAAATTTGAAGGAGACCCAAGAAAAAACACACACTAGAAAGTCCAAGAGGCGTAAAAACACTTCTCAAACAAAAGATCACATAATTGCTGAGAGGAAGAGGAGAGAGAACCTTACCAGAATGTTCGTAGCACTTTCGGCCATTATTCCTGGATTGAAAAAGATGGACAAGCTATCTATCCTCAACAACGCCATAGATCATGTGAAATATCTTCAGAATCGTGTAGAAGATTTGGAGCAACAAAACAAGAAGGAAAACATAGAATCCATAACGTGCTTCAGAAACAACAAACCCTATGTTGAAGACTTTTCAGGGATCTCTAATGGCTTAGATGGTACCAAGACAATTCCCAACGTTGAAGTAAGAGTCTCAGCAAAAGATGTACTCATTAGAGTTATCTGTGACAAAGAAAGGGACATTGTAACAAACCTACTGTTCAAGCTTGCAGCTCATAATCTCTCCATAGTTTGCAGCAATGTTTTGCCATTTGGAAATTCTACTCTAACCATTTCCATCATTGCTAAGGTGGACCGTGAATTCAGCATGGCAATGGATGACCTAGTGAAAATTTTGAACGAGGATTTGCTGAAGTGCTGTAACTTGCAACAATAA 912 0.3816 MDESWEKWLSDLEMDELHLFNEHNMINSLEEELKGEINHPVQPELSWESLSCDSIFNSSTLEENTQHANSSKKPIFSSYILSFEDSSTVPNVTTKTFQYHENLKETQEKTHTRKSKRRKNTSQTKDHIIAERKRRENLTRMFVALSAIIPGLKKMDKLSILNNAIDHVKYLQNRVEDLEQQNKKENIESITCFRNNKPYVEDFSGISNGLDGTKTIPNVEVRVSAKDVLIRVICDKERDIVTNLLFKLAAHNLSIVCSNVLPFGNSTLTISIIAKVDREFSMAMDDLVKILNEDLLKCCNLQQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02001 303 Coils Coil 161 188 - -
Pumo7g02001 303 PANTHER BHLH TRANSCRIPTION FACTOR 21 297 - -
Pumo7g02001 303 SMART finulus 128 177 IPR011598 GO:0046983
Pumo7g02001 303 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Pumo7g02001 303 MobiDBLite consensus disorder prediction 100 126 - -
Pumo7g02001 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Pumo7g02001 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 186 IPR036638 GO:0046983
Pumo7g02001 303 Gene3D - 119 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02001 Pumo-Chr7 53869398 53871805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02001 77 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.833 1.53e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g02001 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02001 - - ccaj:109790958 313.923