Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02000 ATGACAGACAAGCTTTCTATCCTTAACAACGCTGTCGATTACGTGAAATATCTTCAAAATCGTGTAAGAGATTTGGAGGAACAGAATAAGAAGACGGAATCCATAATGTGCTTCAAAAACAACAAACCCAATGTTACTGTTGTTGATGACATTTCAAAGATCTCTGATGGCTTAGATAGACTTACATTTCCCAACGTTGATGCAAGCGTCTCAGGTGAAGATGTAATAATCAGAGTTATTTGTTACAAACGAAAGGACATTATAACGAAGCTACTGCCCAACCTTGCAGCCTATAATCTCTCCATAGTCTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTAAGCATTTCCATCATTGCTAAGGTGGAATGTGAATTCAGCATGGCAATGGACGACCTTGTGGAAACTTTGAACGAGAATTTGCTGAAATGTTGTAACTTGCAACAGTAA 453 0.3819 MTDKLSILNNAVDYVKYLQNRVRDLEEQNKKTESIMCFKNNKPNVTVVDDISKISDGLDRLTFPNVDASVSGEDVIIRVICYKRKDIITKLLPNLAAYNLSIVCSNVLPFGNSTLSISIIAKVECEFSMAMDDLVETLNENLLKCCNLQQ 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02000 150 Coils Coil 8 35 - -
Pumo7g02000 150 Gene3D - 1 37 IPR036638 GO:0046983
Pumo7g02000 150 PANTHER BHLH TRANSCRIPTION FACTOR 2 144 - -
Pumo7g02000 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 34 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02000 Pumo-Chr7 53810264 53811114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02000 3 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.095 2.60e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02000 - - pvu:PHAVU_010G043200g 179.104