Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01995 ATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTGCATTTGGTTAGTTGGGAGAAGGAGAATGTCTCGAGCGAGGCGCTGGAGGCTGCCAGGATTGCTTGCAACAAGTACATGGCGAAATTCGCTGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCATCCCTTCCATGTTCTTAGGATCAACAAAATGCTTTCGTGTGCCGGAGCCGATAGGCTCCAGACCGGGATGCGAGGTGCTTTTGGAAAGCCGCAGGGTACTTGTGCTAGAGTGGCTATTGGCCAGGTCCTCCTTTCCGTCCGCTGCAAGGACAGCAACAGCCATCATGCACAAGAGGCCCTCCGTCGCGCTAAGTTTAAGTTCCCCGGACGCCAAAAGATTATAGTTAGCAGGAAGTGGGGATTCACCAAGTTTAGCCGTAGTGATTATTTGAAGTTCAAGTCAGAGAACAGGATTTTGCCTGATGGTGTGAATGCCAAGCTTCTAGGGTGCCATGGACCATTGGCTAACCGCCAACCAGGAAGAGCCTTTTTGTCTAGTGCTACTGCATAG 555 0.5081 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRILPDGVNAKLLGCHGPLANRQPGRAFLSSATA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01995 184 SUPERFAMILY Ribosomal protein L16p/L10e 3 139 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo7g01995 184 FunFam 60S ribosomal protein L10 1 169 - -
Pumo7g01995 184 CDD Ribosomal_L16_L10e 4 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo7g01995 184 ProSitePatterns Ribosomal protein L10e signature. 71 92 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pumo7g01995 184 Gene3D - 142 177 - -
Pumo7g01995 184 Gene3D Ribosomal protein L10e/L16 1 141 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo7g01995 184 PANTHER 60S RIBOSOMAL PROTEIN L10 1 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo7g01995 184 FunFam 60S ribosomal protein L10, putative 138 180 - -
Pumo7g01995 184 Pfam Ribosomal protein L16p/L10e 13 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01995 Pumo-Chr7 53629128 53630263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01995 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 86.885 4.83e-121 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01995 K02866 - gmx:100305619 371.318