Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01978 ATGCCTCCGAAAACGGCGAAGCGAGGGTCCGCGTCGAGCGCCTCGAAGAGGGGTGGCAGAGGCGGCAGGGGAACCTCGAAGGGTGCACAGAACCAACAGCAGCATGAAGCTGCTGAAGAGGCTGTGAAGGTCGAAGAGAAGCAACAACCCGTTGTTGTTGCCGAGGAGGAACGGCACAAGGTGGTGGAAGAAGAGAACCCTGTGTTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGCTGTGGTTGTTGAGGATAAGGCTATTGACATGAACCAAATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATGCGGCTAATGGGTTGACCGTGGCGAAAAATGATGAGGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTAGATTTAGAGGATAATGATCCTGAGTATGAAGCTGAAGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAGGAAGAAGAGGCTGAAGATAATGTAGGTGAAGAAGAGGGTGATATGGGTGAGGAAGAAGTTGAAGATGTTCATGATGAACTTGAGGGTGAAGAGGAGCATGAGCATGCTGGTGAGGAGCATGAGCATCCAAACTTTGCTGATGTGGAGGAAGAGGAACACCGAGAAGTTGTGAAGGAGAGGCGAAAGCGAAAAGAATTTGAAGTTTTTGTTGGGGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTAGGGGTGGTTACAGAGGTCAGATTGATGATGAACCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAGACGAGCTGTGGCAGAGCTCAGAAATCCAGTGATTAACGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACGAAGGAAGCTTTAAAAGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGATTTGCATTTTTGGAATTTTCCTCTCGTTCTGAAGCTATGGATGCCTTTAAGCGATTGCAGAGGAGGGATGTTGTATTTGGAGTTGATAAGCCAGCAAAAGTTTCTTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTTCGAGATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGCTTGCCAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACATTTGGCACACATGATGCTGCCATAAAATGTGCTGATAGTATTACAGGCACAGAGTTGGGTGAGGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCTAGACCACTCCAGAGAGGCCGCGGAAAACACATTAGTCGTGGGGACTATCGTTCTGGTCGGGGATCTGGAATGATGACAAGGCCTTCATGGAGCCGACCTGCACCTCGTTCTTTTCCTTCTCGTAGTGTAAGAGGAGTAGGAAGTCGTGCTCCACCTGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATACCAGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTGGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGCTGGCTACACCGAGCTCCCTAGAAGCACATCTCGTGCTGCACCAAGGAGAGGCTATGTGGATGATGGATATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCCCATATAAGTTACCGTGAAGGACGTCCTCGAGATTATGATGCTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCACGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTAGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGCATGGGATATGGTGGTGGTGGCAGTAGAAGTTCTATTTCTAGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGAGGTTCTTTTGGTGGTGGTGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTAATGAACCTGGCCTTTCTTAGTCTCTATAGGAAGTTGGTGGCAGCTCATATTCATCAGTGTATTCTAGCAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGCGGTGGATCAGGATCTTATTATTGAGCTAGCTAACTTCATAGATTTCCATATTGTAATTCAATCATTTGTACACAATTGGTTGACCTCCACTGACATGGCCCTCAGAAGATCAATTGCCTTTGCAATATCTTGGGGAAATGCAACAATCAAGCTATTATCAGAGTAG 2649 0.4606 MPPKTAKRGSASSASKRGGRGGRGTSKGAQNQQQHEAAEEAVKVEEKQQPVVVAEEERHKVVEEENPVFEEKQLVVEEKESAVVVEDKAIDMNQMAPEAVEEASHAANGLTVAKNDEEEVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNVGEEEGDMGEEEVEDVHDELEGEEEHEHAGEEHEHPNFADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQARRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSEAMDAFKRLQRRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAIKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMTRPSWSRPAPRSFPSRSVRGVGSRAPPVRPVSVRDRRPIMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYGRREDIPPPRSRVAVDYGSRVASERRPSYRDYPARGPAGYTELPRSTSRAAPRRGYVDDGYGQRFERPPPPPPPPHISYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGGGDVGGMYSSSYGGDYISRGSDVMNLAFLSLYRKLVAAHIHQCILAGVWVVVAVIWVVAVDQDLIIELANFIDFHIVIQSFVHNWLTSTDMALRRSIAFAISWGNATIKLLSE 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01978 882 Coils Coil 110 133 - -
Pumo7g01978 882 CDD RRM_SF 238 309 - -
Pumo7g01978 882 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 170 316 - -
Pumo7g01978 882 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 745 - -
Pumo7g01978 882 CDD RRM_SF 415 489 - -
Pumo7g01978 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Pumo7g01978 882 CDD RRM_SF 318 385 - -
Pumo7g01978 882 Gene3D - 403 520 IPR012677 -
Pumo7g01978 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 480 IPR000504 GO:0003723
Pumo7g01978 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 383 IPR000504 GO:0003723
Pumo7g01978 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 306 IPR000504 GO:0003723
Pumo7g01978 882 FunFam RNA recognition water-stress protein1 403 524 - -
Pumo7g01978 882 Gene3D - 317 399 IPR012677 -
Pumo7g01978 882 MobiDBLite consensus disorder prediction 1 48 - -
Pumo7g01978 882 MobiDBLite consensus disorder prediction 588 602 - -
Pumo7g01978 882 FunFam Heterogeneous nuclear ribonucleoprotein Q 317 399 - -
Pumo7g01978 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 400 IPR000504 GO:0003723
Pumo7g01978 882 MobiDBLite consensus disorder prediction 199 224 - -
Pumo7g01978 882 SUPERFAMILY RNA-binding domain, RBD 231 314 IPR035979 GO:0003676
Pumo7g01978 882 SUPERFAMILY RNA-binding domain, RBD 315 480 IPR035979 GO:0003676
Pumo7g01978 882 SMART rrm1_1 317 396 IPR000504 GO:0003723
Pumo7g01978 882 SMART rrm1_1 414 489 IPR000504 GO:0003723
Pumo7g01978 882 SMART rrm1_1 237 310 IPR000504 GO:0003723
Pumo7g01978 882 MobiDBLite consensus disorder prediction 494 682 - -
Pumo7g01978 882 Gene3D - 150 316 IPR012677 -
Pumo7g01978 882 MobiDBLite consensus disorder prediction 112 128 - -
Pumo7g01978 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 495 IPR000504 GO:0003723
Pumo7g01978 882 MobiDBLite consensus disorder prediction 98 224 - -
Pumo7g01978 882 MobiDBLite consensus disorder prediction 129 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01978 Pumo-Chr7 53110330 53116336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01978 231 494 Eukaryotic Initiation Factors Gene Family AT1G49760 23.411 5.34e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01978 - - gmx:100779340 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01978 7 53110330 53116336 Pumo7g01978 7 53110330 53116336 ECH
Pumo7g01978 7 53110330 53116336 Pumo5g00090 5 3676472 3682835 PCT