Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01920 ATGGAAAATAATACAACATATTGTAATCTTTCTTCGCTGGAATCTGTTCAACACTATCTGCTTCAGCTTGAACATGATTCCAACACTCTCACGAATGTTTCAACCAACAAAATCTGTTACTATCCAACGTACGAACCATTCCCAAGTCCTAGATTCGGCATGGAAGGTGTCAACAACGCGAAGGATTTGTTGGCATGCAAAAGTGCACAGCATGTGGAAGCGCGTGAGGTTCACGCGCTGCCGGTGTGGAAGCGCTACAGGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACCCAAAGAAGAAAAGTGGGAGGATTTGGCTTGGGACTTACGAGACTGAAGAAGAAGCAGGTTTGGCTTATGATATAGCTACTTTCAAGATGCGTGGCAGCAAAGCCAAGTTGAATTTTCCTCACCTTGTTTGTGCTCACGCACCTCCGAAGCCGGTGAAAATCATGAAGGTTTCAAAAGGTAAAGACTTTCTGAAACCTTATTCGTCGCTTTCACCGACTTCAGAGACACAGGAGTCGAAGAAGGGGAAGAATTTGGCTGATTTGTTGAACAGGTTGGCCAAGAATAGAAGCCAAGTACTGAAGGTGTTTGAAATGGGTTTACATGGATGA 639 0.4632 MENNTTYCNLSSLESVQHYLLQLEHDSNTLTNVSTNKICYYPTYEPFPSPRFGMEGVNNAKDLLACKSAQHVEAREVHALPVWKRYRGVRRRPWGKFAAEIRDPKKKSGRIWLGTYETEEEAGLAYDIATFKMRGSKAKLNFPHLVCAHAPPKPVKIMKVSKGKDFLKPYSSLSPTSETQESKKGKNLADLLNRLAKNRSQVLKVFEMGLHG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01920 212 PANTHER DNA-BINDING DOMAIN 70 179 IPR044808 GO:0003700|GO:0009873
Pumo7g01920 212 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Pumo7g01920 212 PRINTS Ethylene responsive element binding protein signature 125 145 IPR001471 GO:0003700|GO:0006355
Pumo7g01920 212 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Pumo7g01920 212 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Pumo7g01920 212 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Pumo7g01920 212 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Pumo7g01920 212 FunFam Ethylene-responsive transcription factor 2 84 144 - -
Pumo7g01920 212 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Pumo7g01920 212 CDD AP2 84 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01920 Pumo-Chr7 50746733 50748339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01920 85 151 AP2-EREBP Transcription Factor Family AT2G44840 72.464 3.72e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g01920 AP2 6.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01920 K09286 - gmx:100527194 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01920 7 50746733 50748339 Pumo7g01920 7 50746733 50748339 ECH
Pumo7g01920 7 50746733 50748339 Pumo5g00066 5 2696920 2698055 PCT