Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01915 ATGGCCACCACAATATCTTGTGATTTCTCTTCATTTGAATCTATTCAACACTATCTTCTTGAGCTTCAACACGATTCCAACACTCCCATGAACGTTTCCAACCACCAAATTTGCTATTCTCCAACGTACAATCCATTCCCAAGCCCTACCTTGAGCTTGGAGGGTGTACATGATGCAAATGATTCGTTAGCATGCAAAAGAGAACACCCTAAGGTGGAGCGTGAGGTTCACGCGCCACCGGTGTGGAAGCGTTACCGGGGCGTGAGGCGTCGGCCTTGGGGCAAGTTCGCAGCAGAGATAAGGGATCCAAAGAAGAATGGTGCTAGGATTTGGCTTGGGACTTATGAAACGGAAGAAGAAGCAGGTTTAGCTTATGATAGAGCTGCTTTTAAGATGCGTGGCAGCAAAGCTAAGTTGAATTTTCCTCACCTTATTGGCTCTCACGTGCCTCCGAAGCCGATGAGAGTGACGAAGGCTTTGAAGCGAAACTCGCCAAAACCTTATTCGTCATACTCACCGGCTTCAAAGACACAAGGGTCAAGGAAGAGAAAAAATTTGGCTGACCTGTTGAACAGGTTGGCCAAGAATAGAAAGCAAGTCCAAGTGTTTGAAATGGGTTAA 621 0.4654 MATTISCDFSSFESIQHYLLELQHDSNTPMNVSNHQICYSPTYNPFPSPTLSLEGVHDANDSLACKREHPKVEREVHAPPVWKRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHVPPKPMRVTKALKRNSPKPYSSYSPASKTQGSRKRKNLADLLNRLAKNRKQVQVFEMG 206
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01915 206 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Pumo7g01915 206 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Pumo7g01915 206 MobiDBLite consensus disorder prediction 163 180 - -
Pumo7g01915 206 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Pumo7g01915 206 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Pumo7g01915 206 MobiDBLite consensus disorder prediction 161 183 - -
Pumo7g01915 206 CDD AP2 83 144 IPR001471 GO:0003700|GO:0006355
Pumo7g01915 206 FunFam Ethylene-responsive transcription factor 2 83 143 - -
Pumo7g01915 206 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Pumo7g01915 206 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Pumo7g01915 206 PANTHER DNA-BINDING DOMAIN 68 182 IPR044808 GO:0003700|GO:0009873
Pumo7g01915 206 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo7g01915 Pumo-Chr7 50597061 50598119 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01915 84 167 AP2-EREBP Transcription Factor Family AT2G44840 73.810 3.52e-38 130
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g01915 AP2 5.8e-15 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01915 K09286 - gmx:100527194 341.658
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01915 7 50597061 50598119 Pumo7g01915 7 50597061 50598119 ECH