Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01902 ATGAGTGAGAAAGATGATGGATTGGGTTTGGGGCTGAGTTTGAGGTTGGGATGCGGAGAAAATGATGATGATAATAATAATAATAATCTAAATCAACAACAACACCCTTTCAACATGCACAAACCCCCTCTTCAATCGGTTCCAAACCAAAGGGCTTCCTTCAATAACTTGTTCCATTTTCATGACCGGAGCTCCGAGTCGCGGTCGTTCTTCCGCGGAATAGACGTGAACTTGCCGCCGCCTCCGCCATCGACGGCGGTTCCGGCGGTGTTTGACGACGAGAACGGGGTGTCGTCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGAAACGGAGACGAGAACGAGAGAACGTCGTGTTCTCACGGCGGAAGCGACGACGATGACGGCGGCGCGTGCGGCGGAGACGGCGACGGCGACACGTCGAGGAAGAAGCTGAGGCTGTCCAAGGAACAGGCCTTGGTGCTGGAAGAAACATTCAAGGAACACAACACTCTGAACCCGAAGCAAAAGCAAGCTTTGGCAAAGCAGTTGAATTTGATGCCTAGACAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAGGTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGCTTCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTTTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGTGAGCGTGTTGCCGTCTCATCCGCACCCTCTTCGTCATCGGCCACCATGCCCTCTGCCCCGCCTCCGGCTAATGTCAACCCAGTAGGCCCTACCGTCCAGCGGCCGGTGCCCGTCAACCCTTGGGCGGCAATGTTGAATCAACACCGTGGCCGGCCATAA 939 0.5335 MSEKDDGLGLGLSLRLGCGENDDDNNNNNLNQQQHPFNMHKPPLQSVPNQRASFNNLFHFHDRSSESRSFFRGIDVNLPPPPPSTAVPAVFDDENGVSSPNSTISSISGKRSEREGNGDENERTSCSHGGSDDDDGGACGGDGDGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSAPSSSSATMPSAPPPANVNPVGPTVQRPVPVNPWAAMLNQHRGRP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01902 312 MobiDBLite consensus disorder prediction 112 130 - -
Pumo7g01902 312 ProSiteProfiles 'Homeobox' domain profile. 145 205 IPR001356 GO:0003677
Pumo7g01902 312 MobiDBLite consensus disorder prediction 1 49 - -
Pumo7g01902 312 Pfam HD-ZIP protein N terminus 1 115 IPR006712 GO:0005634
Pumo7g01902 312 Coils Coil 211 241 - -
Pumo7g01902 312 Gene3D - 141 210 - -
Pumo7g01902 312 CDD homeodomain 149 206 IPR001356 GO:0003677
Pumo7g01902 312 Pfam Homeobox associated leucine zipper 205 239 IPR003106 GO:0006355|GO:0043565
Pumo7g01902 312 MobiDBLite consensus disorder prediction 95 111 - -
Pumo7g01902 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 278 - -
Pumo7g01902 312 SUPERFAMILY Homeodomain-like 132 206 IPR009057 -
Pumo7g01902 312 MobiDBLite consensus disorder prediction 20 49 - -
Pumo7g01902 312 SMART halz 205 248 IPR003106 GO:0006355|GO:0043565
Pumo7g01902 312 MobiDBLite consensus disorder prediction 82 151 - -
Pumo7g01902 312 FunFam Homeobox-leucine zipper protein 18 134 210 - -
Pumo7g01902 312 ProSitePatterns 'Homeobox' domain signature. 180 203 IPR017970 GO:0000981|GO:0006355
Pumo7g01902 312 SMART HOX_1 147 209 IPR001356 GO:0003677
Pumo7g01902 312 MobiDBLite consensus disorder prediction 268 312 - -
Pumo7g01902 312 Pfam Homeodomain 149 203 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01902 Pumo-Chr7 50439080 50442707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01902 53 304 Homeobox Transcription Factor Family AT3G60390 64.151 3.52e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo7g01902 HD-ZIP_N 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01902 K09338 - gmx:100810641 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01902 7 50439080 50442707 Pumo7g01902 7 50439080 50442707 ECH
Pumo7g01902 7 50439080 50442707 Pumo5g00051 5 2564899 2568299 PCT