Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01901 ATGGACAACATTGATTGTGTGTCATTCTTTGATGGCATGGATGAGGATGAGATCCAACATTACACTCTACATCCTTACAACCACTCTGAGTTTTCTAATAACAATAATGTCATGGGAGCCACGACCATTGCTCCTGCAACTAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTACCCCCCAATTCATCAGTGCCATAATGGGCACAAGTTATGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCAATTGTAGACAGGAGCTTGGAGATATTAGGTGTCTGGCACTAGAAAAGAGTGGTGTTGAGGATGCAGAGTGTGGTGTTGGATCCCATCCTCATCCATGCCATTAG 369 0.4417 MDNIDCVSFFDGMDEDEIQHYTLHPYNHSEFSNNNNVMGATTIAPATSVHELLECPVCTNSMYPPIHQCHNGHKLCSTCKTRVHNRCPNCRQELGDIRCLALEKSGVEDAECGVGSHPHPCH 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01901 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 109 IPR013083 -
Pumo7g01901 122 ProSiteProfiles Zinc finger RING-type profile. 55 91 IPR001841 -
Pumo7g01901 122 SUPERFAMILY RING/U-box 41 97 - -
Pumo7g01901 122 CDD RING-HC_SIAHs 53 91 - -
Pumo7g01901 122 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01901 Pumo-Chr7 50403703 50404383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01901 46 104 C3H Transcription Factor Family AT2G41980 76.271 3.87e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01901 K04506 - tcc:18605771 175.252