Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01882 ATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTTAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGGTTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTATTTGCCAGGGAGAACAGACAATGATGTTAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAGACATCAGCAACAACTCCCAGATCACAGAAAAACAAAACTAAAGTTCCTACCTTTATTGATGTTCCAACTTTGGAGGCTCCTAAGTTCAGTTCATCATCAGAGGGGGAACCATCATCAAAGCCTCAGTCATGCTCACTGCCCTACATTGATAATTCTGAGGTTATCAAAATGGTGGCTTTGCCAGATATCATCAAGTCTGAGTTGCCTAGTTCTGACACAATCCATGTTGAACAAGAGTTTACCCTTTTTGAGAACTATAATAAAAGCACTGAACAGATTGCCTTTCCTCAGATTCCAGAACTCCAAAATGGCCTCACATTCTCAATGGAAAACCAAGATCTCTTGCCCACAATTGATGAGCCATGTTTCATTGAAGACTTGTGTCCTATTGATGCATCTGAGTTTGGAATAGGTTCACAACACCCCTTTGGGTTCCCTTTCTTTGAGCCACCTGGAAGTTGCAGATTTGGGACAAGGGATGCAATTGATAACTCCAAAATCAGTGACAGCTTCTTCGATGATTTCCCTGTGGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCAAACCTCTGA 939 0.4366 MHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATTPRSQKNKTKVPTFIDVPTLEAPKFSSSSEGEPSSKPQSCSLPYIDNSEVIKMVALPDIIKSELPSSDTIHVEQEFTLFENYNKSTEQIAFPQIPELQNGLTFSMENQDLLPTIDEPCFIEDLCPIDASEFGIGSQHPFGFPFFEPPGSCRFGTRDAIDNSKISDSFFDDFPVDMFDHMDPPASPSNL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01882 312 Gene3D - 68 137 - -
Pumo7g01882 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Pumo7g01882 312 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Pumo7g01882 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo7g01882 312 CDD SANT 69 108 IPR001005 -
Pumo7g01882 312 CDD SANT 15 60 IPR001005 -
Pumo7g01882 312 SMART sant 66 114 IPR001005 -
Pumo7g01882 312 SMART sant 12 62 IPR001005 -
Pumo7g01882 312 FunFam MYB transcription factor 13 65 - -
Pumo7g01882 312 PANTHER TRANSCRIPTION FACTOR DUO1 3 311 - -
Pumo7g01882 312 Pfam Myb-like DNA-binding domain 16 75 - -
Pumo7g01882 312 FunFam Transcription factor GAMYB 68 137 - -
Pumo7g01882 312 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pumo7g01882 312 MobiDBLite consensus disorder prediction 147 166 - -
Pumo7g01882 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Pumo7g01882 312 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01882 Pumo-Chr7 49874233 49876233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01882 1 309 MYB Transcription Factor Family AT3G60460 49.074 6.10e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo7g01882 Myb_DNA-bind_6 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01882 K09422 - gmx:100805384 592.423