Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01876 ATGCTGACTTCAATTCCTTTGCCACATCCTCCAACTCCTCCACTTCCACCACCACTCCTTCAATCTTCTTTGACACCAACACTTCTAGCACATCCTCCTCCTCAACATCTCCTACCACAAATTCAGATTCATACACCAAAGAACACACCAAAACCCCTCAAAATGACTCAACAACCACTTCTCAAACCTCATTGGAAAACTGGAAAGGACTCAAAGGGGAGCAAGAAGAGGCAGAGAGACAATAACAACAATCAGAATCACCCTACATATAGGGGTGTAAGGATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCTAGAGCACATGATGTGGCTGCCTTAGCCATCAAGGGCCATTCAGCATACCTCAATTTCCCTGAATTGGCTCAAGAACTTCCAAGGCCAGCTAGCACATCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCTGCAAACACTGCCTTTGAGGTGGTTAAGCATTGTCAAAGTACTGAAGAAGAAGAAGATGAAGCAGAACCAAGCCAAGCAGAACAAGCCTCATCTTCAACTCTCTCAATGGACAATACTCAAGAGCCTTCAAGTTCTCACTCTACCACAGATGATGACACTTTGTTTGACCTTCCAGATCTTTTCCCTGATGGACTTTGCTCCTATTCTTCTTCTTGGCATTTTTGTGCAGTTGATAGTGGCTTTAGGCTTGAGGAGTCATTTGTTTGGGAGAACTATTAG 789 0.4499 MLTSIPLPHPPTPPLPPPLLQSSLTPTLLAHPPPQHLLPQIQIHTPKNTPKPLKMTQQPLLKPHWKTGKDSKGSKKRQRDNNNNQNHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPASTSPKDIQAAAAKAANTAFEVVKHCQSTEEEEDEAEPSQAEQASSSTLSMDNTQEPSSSHSTTDDDTLFDLPDLFPDGLCSYSSSWHFCAVDSGFRLEESFVWENY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01876 262 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Pumo7g01876 262 MobiDBLite consensus disorder prediction 41 55 - -
Pumo7g01876 262 MobiDBLite consensus disorder prediction 1 91 - -
Pumo7g01876 262 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Pumo7g01876 262 Pfam AP2 domain 88 139 IPR001471 GO:0003700|GO:0006355
Pumo7g01876 262 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Pumo7g01876 262 MobiDBLite consensus disorder prediction 182 221 - -
Pumo7g01876 262 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Pumo7g01876 262 MobiDBLite consensus disorder prediction 1 21 - -
Pumo7g01876 262 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Pumo7g01876 262 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Pumo7g01876 262 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Pumo7g01876 262 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Pumo7g01876 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 71 231 - -
Pumo7g01876 262 MobiDBLite consensus disorder prediction 195 221 - -
Pumo7g01876 262 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01876 Pumo-Chr7 49760630 49761618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01876 77 257 AP2-EREBP Transcription Factor Family AT2G44940 57.073 5.92e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g01876 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01876 - - gsj:114420351 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01876 7 49760630 49761618 Pumo7g01876 7 49760630 49761618 ECH