Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01868 ATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCTCACCGGAAACGAGGACAGCGCCGCCGGAGCTTCCGATCAAACCCACCGTCAAATCTTCGACCACTACGCGTCGCACACGCTCATCCCCGACCACTTCCTACACGCGCCAACGCACTCCACCGCCGCGGCAACCACCGTGGATTTCACCCACCACCACTTCAACCCGCAACCCCACCACCACCACCACGTGAACAACCACCACCACCAACACCACGCCTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCAACACCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTCCCCCACGTCAACGCAGTTGGGCCTGGGCCTGGACACGGGCCCGGGCCCGGCCCAGGCGGACTCCTCCTTGTCCCCAAGTCCGAAGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGACTCAACCTCGGAGGACGGACTTACTTCTCGTCCTCCGAGGATGACTTCGTGAGCCGGCTCTACCGCCGGTCGAGGCCCGCTGAACCGGGCTCGACCGCGTTGTCGAATTCGCCGCGGTGCCAGGCCGAGGGATGCAATGCTGATCTGTCGCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCAACGTCATCGCCGCTGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTGTGGTGGTGCTTCTTTGTTCCCACCGTCGGAATTGCATCAATCATTGAGTTCAGCTCCCTCGGGGGCATTTCCGTCTTTTCACACACCTACCTTTGCTTCTTCTTGCCGTTCCATGTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCTGATCATAATCGCCGCAGAAGAAAAACTCAGCAACCAACTCAAGAAATTCAGAAATCTCAGCCTTCTTTGGATAATGTTGCAATATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACGGTGGCGGTGTCGCCACCGGATTATTTCCGGCAGAGGCCATACCAAAGCACAAACCCTTCATCGTCTTCAAGCTCACTGTTTTTCTCAAGCGGGTAG 1113 0.584 MLDYEWGNPSTIMLTGNEDSAAGASDQTHRQIFDHYASHTLIPDHFLHAPTHSTAAATTVDFTHHHFNPQPHHHHHVNNHHHQHHAFFDPRAFHGASNTSYPPPPSMLSLDPLPHVNAVGPGPGHGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTALSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAANVIAAGLTQRFCQQCSRLWWCFFVPTVGIASIIEFSSLGGISVFSHTYLCFFLPFHVLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKSQPSLDNVAISPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTNPSSSSSSLFFSSG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01868 370 SUPERFAMILY SBT domain 193 243 IPR036893 GO:0003677|GO:0005634
Pumo7g01868 370 ProSiteProfiles Zinc finger SBP-type profile. 192 306 IPR004333 GO:0003677
Pumo7g01868 370 MobiDBLite consensus disorder prediction 310 370 - -
Pumo7g01868 370 SUPERFAMILY SBT domain 279 310 IPR036893 GO:0003677|GO:0005634
Pumo7g01868 370 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 175 362 IPR044817 GO:0003677
Pumo7g01868 370 MobiDBLite consensus disorder prediction 299 370 - -
Pumo7g01868 370 Gene3D - 185 293 IPR036893 GO:0003677|GO:0005634
Pumo7g01868 370 Pfam SBP domain 279 305 IPR004333 GO:0003677
Pumo7g01868 370 Pfam SBP domain 195 242 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01868 Pumo-Chr7 49640780 49642915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01868 1 249 SBP-box Gene Family AT1G02065 41.948 2.22e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo7g01868 SBP 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01868 - - gmx:100778566 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01868 7 49640780 49642915 Pumo7g01868 7 49640780 49642915 ECH