Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01867 ATGGACTTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACCAAAGAGGAAAATAGTAACAATAACACTATTGTTTGGTATTCATCATGGGAAGCTACCAATAATGTTACTTCTTCTAATTCTAGTCTCAGTAATACACTACACACCACCACGGCGGCGGAGGGCTACGCCGGCGGAGGTCACCGCCACCACCACCACCACCAGCAGCAACTATATGGCGGCGGCGGCGAAGGGTGTCACGTGCGGGCGGACACTCACCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATGCAACTAACGGTGATGCTAATAATAATGCTAACCCATTGGGGAACCGACACGTGTGCGGTGGTGGTGGTGCGGGTTTTGTTTTGGCGGGTAATGATAAGAGAGCGAAGGGCTTTTATGGTGGTGCCGGTGGTGGTGGCGGCGGCGGGAAAACGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGAAGGCACAGAGTTTGTGATATGCATTCCAAGGCACCCAAAGTTGTGGTGTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGACGACTCAAAGAGGAGTTGTAGGAGGAGACTGGCAGGCCATAATGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGAAATTCTAAACAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGACTGGGAATAGTAGTGATAATTGGCTATCTCATGCTGATCTCTCCACAAGATGCAGTGCAGCATTACGTGAATTGATAGCAGAAAACCGTGCTACTGCCCTCACCACTAGACAACAACAACTTCAACTTGTTTATGATAGAGACTGGCATGTTGTTGTGCCCCACCATGCTCATGCTGCAGTGGAACAACACTTTGATGAAGAGTTACAACAACCTGAGTCCAATTATTTTCCACAACAGATGTTTCCCCAGACACAATAA 1029 0.4927 MDFGENNMFSLNTHTKEENSNNNTIVWYSSWEATNNVTSSNSSLSNTLHTTTAAEGYAGGGHRHHHHHQQQLYGGGGEGCHVRADTHLTCLHLGKRHYFEDATNGDANNNANPLGNRHVCGGGGAGFVLAGNDKRAKGFYGGAGGGGGGGKTAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSKQGCALSLLSSGTGNSSDNWLSHADLSTRCSAALRELIAENRATALTTRQQQLQLVYDRDWHVVVPHHAHAAVEQHFDEELQQPESNYFPQQMFPQTQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01867 342 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 313 IPR044817 GO:0003677
Pumo7g01867 342 FunFam Squamosa promoter-binding-like protein 14 153 222 - -
Pumo7g01867 342 Pfam SBP domain 161 234 IPR004333 GO:0003677
Pumo7g01867 342 SUPERFAMILY SBT domain 159 237 IPR036893 GO:0003677|GO:0005634
Pumo7g01867 342 Gene3D - 154 222 IPR036893 GO:0003677|GO:0005634
Pumo7g01867 342 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Pumo7g01867 342 MobiDBLite consensus disorder prediction 54 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01867 Pumo-Chr7 49597810 49601353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01867 158 273 SBP-box Gene Family AT2G42200 57.143 1.14e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo7g01867 SBP 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01867 - - gmx:100780159 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01867 7 49597810 49601353 Pumo7g01867 7 49597810 49601353 ECH