Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01861 ATGGACTTGTACGGTTCCTTTTCCACCCCTTCAGATTGCTTACACATTGATGATTTTCTAGACTTCTCCAACATCACCACCGACACCCACCACCACCACCTTCCTCCGCCGCAAAACCCTCCATTCTCCCATGACCCCAATTTCTTCTTCAATTTCCCTTCCGTTCCGAGCGACGAAGCAGCGGAGCTGGAATGGCTCTCCCAGTTCGTGGACGACGACGCGACGTCGTTTCACGAATTCCCACCACCCGCATCCATTGGATCCCACACGACGCCGTTTCTCTCCAACAACAATCACAGAAACGATAACAACGATCCCAAATCATCATCTTCTTCACCGGTCGCCGGAAGATCGAGATCGAGAAGGGAAGGGTCCGTGACCGTCGACGGCGGCGTGCGGCGGTGCAGCCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGAACGGGACCGCTGGGGCCGAAGACCCTGTGCAACGCTTGCGGCGTTCGGTTCAAGTCGGGTCGACTCGTACCCGAATACCGACCCGCCGCGAGCCCCACGTTCGTGCTGACTCAGCACTCCAACTCGCACCGCAAGGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCACCAGCAGCAGCAAGAGCAATGCTACCGTCAAACCCACGACTTCAAAGTCTGCTGA 669 0.5815 MDLYGSFSTPSDCLHIDDFLDFSNITTDTHHHHLPPPQNPPFSHDPNFFFNFPSVPSDEAAELEWLSQFVDDDATSFHEFPPPASIGSHTTPFLSNNNHRNDNNDPKSSSSSPVAGRSRSRREGSVTVDGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLRHQQQQEQCYRQTHDFKVC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01861 222 CDD ZnF_GATA 134 181 IPR000679 GO:0006355|GO:0043565
Pumo7g01861 222 Gene3D - 132 179 IPR013088 GO:0006355|GO:0008270
Pumo7g01861 222 PANTHER GATA TRANSCRIPTION FACTOR 112 208 - -
Pumo7g01861 222 MobiDBLite consensus disorder prediction 77 129 - -
Pumo7g01861 222 ProSitePatterns GATA-type zinc finger domain. 135 160 IPR000679 GO:0006355|GO:0043565
Pumo7g01861 222 ProSiteProfiles GATA-type zinc finger domain profile. 133 165 IPR000679 GO:0006355|GO:0043565
Pumo7g01861 222 SMART GATA_3 129 179 IPR000679 GO:0006355|GO:0043565
Pumo7g01861 222 Pfam GATA zinc finger 135 168 IPR000679 GO:0006355|GO:0043565
Pumo7g01861 222 FunFam GATA transcription factor 126 211 - -
Pumo7g01861 222 MobiDBLite consensus disorder prediction 88 118 - -
Pumo7g01861 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01861 Pumo-Chr7 49454027 49457151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01861 34 208 C2C2-Gata Transcription Factor Family AT2G45050 51.389 2.82e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo7g01861 GATA 7.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01861 - - gmx:100782863 342.813