Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01810 ATGGGAGGCGAAGGAGGGGCTGCGAAGAAGAAGAAGAAGAATAAGAATAAGAATAAGAATGTGAAATCTGGGGGTTTTGAGTCGCTTGGTCTGAATCCGAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCGATTCAGCGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGACGTTGTTGCCATGGCTCGCACCGGCTCTGGCAAAACGGCGGCGTTTCTTGTCCCCATGCTTCACCGCCTCAACCAGCATATCCCTCAGTCTGGAGTTAGAGCCCTCATTTTGTCCCCAACTAGGGACTTGTCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGCGGAGATAGTATGGAGAGTCAGTTTGAGGAGTTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTGGATGACATGTCCTTGCGCAGTGTCGAGTATGTGGTTTTCGATGAGGCCGATTGTTTATTTGGCATGGGTTTCGCTGAGCAGTTGCATCAAATTCTTGCTCAGCTCGGGGACAACCGTCAGACCTTGCTTTTCAGTGCCACATTGCCCAGTGCACTTGCGGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTCCGCCTCGACTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACGCCGCTTTGCTCTATTTGATTAGGGAGCATATTGGTTCCGATCAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAATGTTTTGTTTCGTGAAGAGGGTATTGAGCCGTCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATCCATGTATCAAGGTTTAGGGCTAGGAAGACAATGTTGTTGATTGTGACAGATATTGCTGCTCGGGGCATTGACATTCCATTACTTGATAATGTTGTCAATTGGGACTTCCCCCCCAAGCCAAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCAAAACCAATCAAACCTGCTCCCACCGAAGAAGAGGTCTTGCAGGATGTGGATGGAGTAATGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTATTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACGGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATCTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAACAGCAGCAGTCTAAGAGTAATAAGGAAAAGGAGGATATTCAATCGGAAATCATTCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGTTCTAAGAGAAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCTTCAGATAGATTGGAAGCAGCTGTCCTCGATCTAGTGGCAGATGATGGTGCTGGCATAAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGCATATATAAGAAGTGGAAAGAACGCTCACACGGTAAGATATCACTTAAAGGGACAAATAATGATGGTGATCCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAAGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAAAAGGCCAACAGGGTTTCTTACGTAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAAAAGAAAAGGCAAATAG 2352 0.4413 MGGEGGAAKKKKKNKNKNKNVKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLSLQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGDNRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEVLQDVDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKSNKEKEDIQSEIIPSMEKGRKARGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASDRLEAAVLDLVADDGAGIKKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHGKISLKGTNNDGDPQESTSLAGSYQRSRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQKKANRVSYVKSKSTKGKKFGKNGKKRKGK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01810 783 MobiDBLite consensus disorder prediction 760 783 - -
Pumo7g01810 783 MobiDBLite consensus disorder prediction 557 579 - -
Pumo7g01810 783 Pfam DEAD/DEAH box helicase 48 215 IPR011545 GO:0003676|GO:0005524
Pumo7g01810 783 Pfam Helicase conserved C-terminal domain 252 362 IPR001650 -
Pumo7g01810 783 CDD DEADc_DDX54 24 229 IPR033517 -
Pumo7g01810 783 Gene3D - 243 473 IPR027417 -
Pumo7g01810 783 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 695 - -
Pumo7g01810 783 MobiDBLite consensus disorder prediction 687 783 - -
Pumo7g01810 783 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Pumo7g01810 783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 228 IPR014001 -
Pumo7g01810 783 SMART DBP10CT_2 630 692 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pumo7g01810 783 SMART helicmild6 281 362 IPR001650 -
Pumo7g01810 783 MobiDBLite consensus disorder prediction 735 759 - -
Pumo7g01810 783 MobiDBLite consensus disorder prediction 1 26 - -
Pumo7g01810 783 Pfam DBP10CT (NUC160) domain 630 691 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pumo7g01810 783 CDD SF2_C_DEAD 250 371 - -
Pumo7g01810 783 Gene3D - 5 231 IPR027417 -
Pumo7g01810 783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 401 IPR001650 -
Pumo7g01810 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 380 IPR027417 -
Pumo7g01810 783 MobiDBLite consensus disorder prediction 699 722 - -
Pumo7g01810 783 SMART ultradead3 43 250 IPR014001 -
Pumo7g01810 783 MobiDBLite consensus disorder prediction 554 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01810 Pumo-Chr7 48620974 48627675 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01810 18 395 Eukaryotic Initiation Factors Gene Family AT1G72730 31.053 3.06e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01810 K14808 - gmx:100806274 1414.05