Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01796 ATGGGGCATTTGTCTTTATCTTCTTCTGGAGCTTTTGTATCAACAACAGACACACAAAAGGTTCATGCTCCAGGTGTTGCAAGATCGTTTCAACACTTAGTCTCAAGGGTGGCAGTAACGCATCAAAATATTCCAGAAGCTCCAGAAGAAGATAAAGACAAATGCCGCATCTGTCTGGAAGAGTTTGGAGATGGAGACGAAACTGAGAAGCTGCATTCATGTGTGCATAAGTTTCATGCTCATTGCATCCAACTGTGGCTCATGTGCAAGAACTTTTTTGCCTGGTGTGCAAATGAATTGGGTTGGAAACCAATGAAGCTAGACCATCAGTTGAAGTAA 339 0.4248 MGHLSLSSSGAFVSTTDTQKVHAPGVARSFQHLVSRVAVTHQNIPEAPEEDKDKCRICLEEFGDGDETEKLHSCVHKFHAHCIQLWLMCKNFFAWCANELGWKPMKLDHQLK 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01796 112 Pfam Ring finger domain 53 91 IPR001841 -
Pumo7g01796 112 ProSiteProfiles Zinc finger RING-type profile. 55 89 IPR001841 -
Pumo7g01796 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 44 96 IPR045191 GO:0061630
Pumo7g01796 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 101 IPR013083 -
Pumo7g01796 112 SUPERFAMILY RING/U-box 45 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01796 Pumo-Chr7 48299393 48300767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01796 6 87 C3H Transcription Factor Family AT1G20823 38.372 6.18e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01796 - K10635 gsj:114392181 83.5741