Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01794 ATGCAAACTCTCCATTACGTGTCTTTTGCTGTAGTATTTTATTCTCTGTTACTCAACCCTTGCCATTGTCTCAATCTCAAATTATTTAATGCTTCCAAAATTCAAAATGAGGATCAATGGCAAGTAGGAGCAGCTACATGGTTTGGACCACCAGAGGGTGGTGGGTCGGATGGGGGTGCTTGTGGATACGGTGACAGTGTGGAGAAACTGCCACTCTCTAAAATGGTATCAGCTAGGGGTCCTTCTCTTTTCCATGGCGGCATAGGATGTGGGGCTTGTTATCAGGTAAAATGCACAGAAAATGCCTTATGCTCAGGAAACCCGGTGAGCGTGATGATAAGTGATGAATGCCCCGGTTGTATCTTACAATCAGTTCATTTTGATCTCAGTGGCACTGCCTTTGGTTCCATGTCAACTCCAGGCCAGGCATATAATCTTCGCAATGTTGGAGAGCTTATTATTCTCTACAGAAGGGTTGCATGCTACTTTGGGAACTCCATAGCCTTTATCATCGATAATGGGGCCAACTCATACTATTTTGCTACCGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCTAATTATGACACGTGGCTTCCCATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTTTACAATTGCAAGCGCCATTCTCTATTAAACTCACAGAAGAGGGCAAGGACTATTACAAGACCATTGTGGCTGATAGTGTAATTCCACATGACTGGAAACCTGGCCAAGTGTATCGATCTGTTAATTTTTAA 798 0.4398 MQTLHYVSFAVVFYSLLLNPCHCLNLKLFNASKIQNEDQWQVGAATWFGPPEGGGSDGGACGYGDSVEKLPLSKMVSARGPSLFHGGIGCGACYQVKCTENALCSGNPVSVMISDECPGCILQSVHFDLSGTAFGSMSTPGQAYNLRNVGELIILYRRVACYFGNSIAFIIDNGANSYYFATEIEYENGDGDLVDIELKQANYDTWLPMQRSWGARWALNLGLQLQAPFSIKLTEEGKDYYKTIVADSVIPHDWKPGQVYRSVNF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01794 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Pumo7g01794 265 PANTHER EXPANSIN-B3 17 262 - -
Pumo7g01794 265 SUPERFAMILY PHL pollen allergen 166 262 IPR036749 -
Pumo7g01794 265 Gene3D - 165 264 IPR036749 -
Pumo7g01794 265 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Pumo7g01794 265 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Pumo7g01794 265 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Pumo7g01794 265 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Pumo7g01794 265 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Pumo7g01794 265 Gene3D - 26 161 IPR036908 -
Pumo7g01794 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Pumo7g01794 265 SUPERFAMILY Barwin-like endoglucanases 37 163 IPR036908 -
Pumo7g01794 265 Pfam Expansin C-terminal domain 167 251 IPR007117 -
Pumo7g01794 265 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pumo7g01794 265 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pumo7g01794 265 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pumo7g01794 265 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pumo7g01794 265 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Pumo7g01794 265 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Pumo7g01794 265 Pfam Lytic transglycolase 80 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01794 Pumo-Chr7 48236617 48241909 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01794 19 265 Expansin Gene Family AT1G65680 55.336 4.84e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01794 - - gmx:100786475 439.113