Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01792 ATGCAAACTCTCCGTTACATGTCTTTTGCTGTAGTATTTTATTCTCTGTTACTCAACCCTTGCCATTGTCTCAATCTCAAATTATTTAATGCTTCCAAAATTCAAAATGAGGATCAATGGCAAGTAGGAGCAGCTACATGGTTTGGACCACCAGAGGGTGGTGGGTCGGATGGGGGTGCTTGTGGATACGGTGACAGTGTGGAGAAACCGCCACTCTCTAAAATGGTATCAGCTGGGGGTCCTTCTCTTTTCCGTGGCGGCATAGGATGTGGGGCTTGTTATCAGGTAAAATGCACAGAAAATGCCTTATGCTCGGGAAACCCGGTGAGTGTGATGATAAGTGATGAATGCCCCGGTTGTATCTTACAATCAGTTCATTTTGATCTCAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAGGCCAGGCATATAATCTTCGCAATGTTGGAGAGCTTAATATTCTCTACAGAAGGGTTGCATGCTCCTTTGGGAACTCCATAGCCTTTATCATCGATAATGGGGCCAACTCATACTATTTTGCTACCGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCCATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTTTACAATTGCAAGCGCCATTCTCTATTAAACTCACAGAAGAGGGCAAGGACTATTACAAGACCATTGTCGCTGATAGTGTAATTCCACATGACTGGAAACCTGGCCAAGATCAATGGCAAGTAGCAGCAGCTACATGGTTCGGATCACCAAAGGGTGGTGGGTCGGATGGGGGTGCTTGTGGATATGGTGACAGTGTGGAGAAACCTCCACTCTCTAAAACGCAATTATGTTTGTATTATGTAGATGGAAGACATTTATCTTTGTTCAATTTTCAGGTAAAATGCACAGAAAATGCTGCATGCTCGGGAAACCCTGTTAGTGTGATGATAACTGATGAATGTCCCGGTTGTAACTTAAGATCAATCCATTTTGATCTCAGTGGAACTACCTTTGGTTCCATGGCAACTCCAGGCCAGGCATATAATCTTCGCAATGCTGGAGAGCTTAATATTCTTTATAGAAGGGTTGCATGCTCCTATGGGAACTCTATAGCCTTTATCATCGATAATGGGGCCAACCCATATTATTTTGCTACTGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCAATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTTTAGAATTACAAGCGCCATTCTCTATTAAGCTCACAGAAGAAGGCAAGGGCTATTACAAGACCATTGTGGCTGATAGTCGTGATTGTTGCACTCGTCGGGAACCTCGCCATCATAGCCAAGAACAAAACCATAAAAGCCCTTCTCTCCTCGGCGATGTCTCCGCCGCGATTGTTGCGCTCGCCGGGAACTTCGCCGCCGCCACCACGCTGATGTGCTTCGTCGGCATGTCAGCGTTGCTTGCTATTGTTGATGTCACGATTAATGTGTGTATTGCAAGGAACACCATTGAGGATATGCGGTCCTCAGTTGCTATACTCCAACAATCTTTGCAACAGGAAGCAAACGCACATGAGGTTAAACATCACAAAAATGTTGAGTTTCGCTCCAAGATCACTGAGGGGTTAAAACAAAATTCTGGTAATCAGCCTCACATGACTAAGAAGAGTTGGTTATTGAGGAGGCCAGTTGGGAGGAAGAGTTGGTTATTCATATCCAATTCTCTTCTTTCAACCTTGAGGACAAAGCTACTGTCATAA 1860 0.4505 MQTLRYMSFAVVFYSLLLNPCHCLNLKLFNASKIQNEDQWQVGAATWFGPPEGGGSDGGACGYGDSVEKPPLSKMVSAGGPSLFRGGIGCGACYQVKCTENALCSGNPVSVMISDECPGCILQSVHFDLSGTAFGSMATPGQAYNLRNVGELNILYRRVACSFGNSIAFIIDNGANSYYFATEIEYENGDGDLVDIELKQANSDTWLPMQRSWGARWALNLGLQLQAPFSIKLTEEGKDYYKTIVADSVIPHDWKPGQDQWQVAAATWFGSPKGGGSDGGACGYGDSVEKPPLSKTQLCLYYVDGRHLSLFNFQVKCTENAACSGNPVSVMITDECPGCNLRSIHFDLSGTTFGSMATPGQAYNLRNAGELNILYRRVACSYGNSIAFIIDNGANPYYFATEIEYENGDGDLVDIELKQANSDTWLPMQRSWGARWALNLGLELQAPFSIKLTEEGKGYYKTIVADSRDCCTRREPRHHSQEQNHKSPSLLGDVSAAIVALAGNFAAATTLMCFVGMSALLAIVDVTINVCIARNTIEDMRSSVAILQQSLQQEANAHEVKHHKNVEFRSKITEGLKQNSGNQPHMTKKSWLLRRPVGRKSWLFISNSLLSTLRTKLLS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01792 619 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Pumo7g01792 619 Gene3D - 260 378 IPR036908 -
Pumo7g01792 619 SUPERFAMILY Barwin-like endoglucanases 258 383 IPR036908 -
Pumo7g01792 619 CDD DPBB_EXPB_N 40 161 - -
Pumo7g01792 619 Pfam Lytic transglycolase 77 141 IPR009009 -
Pumo7g01792 619 Pfam Lytic transglycolase 312 374 IPR009009 -
Pumo7g01792 619 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 279 385 IPR007112 -
Pumo7g01792 619 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Pumo7g01792 619 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Pumo7g01792 619 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Pumo7g01792 619 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Pumo7g01792 619 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Pumo7g01792 619 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Pumo7g01792 619 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Pumo7g01792 619 Gene3D - 26 161 IPR036908 -
Pumo7g01792 619 PANTHER EXPANSIN-B3 18 258 - -
Pumo7g01792 619 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 397 467 IPR007117 -
Pumo7g01792 619 Pfam Expansin C-terminal domain 167 251 IPR007117 -
Pumo7g01792 619 Pfam Expansin C-terminal domain 386 466 IPR007117 -
Pumo7g01792 619 SUPERFAMILY PHL pollen allergen 385 458 IPR036749 -
Pumo7g01792 619 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pumo7g01792 619 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Pumo7g01792 619 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pumo7g01792 619 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Pumo7g01792 619 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pumo7g01792 619 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pumo7g01792 619 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Pumo7g01792 619 Gene3D - 379 469 IPR036749 -
Pumo7g01792 619 Gene3D - 162 259 IPR036749 -
Pumo7g01792 619 SUPERFAMILY Barwin-like endoglucanases 37 163 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01792 Pumo-Chr7 48131131 48151046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01792 261 465 Expansin Gene Family AT1G65680 51.628 1.76e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01792 - - gmx:100786475 448.358