Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01791 ATGTCACCGATGTCCACATTAAAATGCATTGGTTTGTTCAATTTTCAGGTAAAATGCACAGAAAATGCCTTATGCTCAGGAAATCCAGTGAGTGTGATGATAAGTGATGAATGCCCTGGTTGTACCTTACCATCAGTCCATTTTGATCTCAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAAGCCAGGGATATAATCTTTGCAATGCTGGAGAGCTTAATATTCTATACATAAGGGTTGCATGCTCCTTTGGGAACTCCATAGCGTTTATCATCGATAATGGGGCCAACTCATACTATTTTGCTACCGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCAAATTCTGACACGTGGCTCCCAATGCAGCGTTCATGGGGTGCAAGGTGGGCTTCGAACTTAGGTTTACAATTGCAAGCGCCATTCTCTATTAAGCTCACAGAAGAGGGCAAGGACTATTACAAGACCATTGTGGCTGATAGTGTAATTCCACATGACTGGAAACCTGGCCAAGTTTATTGA 546 0.4322 MSPMSTLKCIGLFNFQVKCTENALCSGNPVSVMISDECPGCTLPSVHFDLSGTAFGSMATPSQGYNLCNAGELNILYIRVACSFGNSIAFIIDNGANSYYFATEIEYENGDGDLVDIELKQANSDTWLPMQRSWGARWASNLGLQLQAPFSIKLTEEGKDYYKTIVADSVIPHDWKPGQVY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01791 181 PRINTS Major pollen allergen Lol pI signature 59 74 IPR005795 GO:0005576|GO:0019953
Pumo7g01791 181 PRINTS Major pollen allergen Lol pI signature 19 29 IPR005795 GO:0005576|GO:0019953
Pumo7g01791 181 PRINTS Major pollen allergen Lol pI signature 90 105 IPR005795 GO:0005576|GO:0019953
Pumo7g01791 181 PRINTS Major pollen allergen Lol pI signature 106 121 IPR005795 GO:0005576|GO:0019953
Pumo7g01791 181 PRINTS Major pollen allergen Lol pI signature 136 153 IPR005795 GO:0005576|GO:0019953
Pumo7g01791 181 Gene3D - 83 181 IPR036749 -
Pumo7g01791 181 PRINTS Expansin/Lol pI family signature 169 181 IPR007118 GO:0005576
Pumo7g01791 181 PRINTS Expansin/Lol pI family signature 70 86 IPR007118 GO:0005576
Pumo7g01791 181 PRINTS Expansin/Lol pI family signature 127 141 IPR007118 GO:0005576
Pumo7g01791 181 PANTHER EXPANSIN-B3 15 181 - -
Pumo7g01791 181 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 87 IPR007112 -
Pumo7g01791 181 Pfam Lytic transglycolase 15 64 IPR009009 -
Pumo7g01791 181 SUPERFAMILY Barwin-like endoglucanases 15 84 IPR036908 -
Pumo7g01791 181 Pfam Expansin C-terminal domain 88 172 IPR007117 -
Pumo7g01791 181 SUPERFAMILY PHL pollen allergen 87 181 IPR036749 -
Pumo7g01791 181 Gene3D - 13 82 IPR036908 -
Pumo7g01791 181 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 99 181 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01791 Pumo-Chr7 47696455 47704968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01791 15 181 Expansin Gene Family AT1G65680 52.047 7.00e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01791 - - gmx:100786475 299.286