Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01790 ATGCAAGTTCTTCGTTACATGTCTTTTGTTGTAGTATTTTATTCTCTGTTATTAAACCCTTGCCATTGTCTCAATCTCAATTTATTTAATGCTTCCAAAATTCAAAACGAGGATCAATGGCAAGTAGCAGCAGCTACATGGTACGGACTACCAGAGGGTGGTGGGTCGGATGGGGGTGCTTGTGGATACGGTGACAGTGTGGAGAAACCTCCACTCTCTAAAATAGTATCAGCTGGAGGTCCTTCTCTTTTCCGTGGCGGCATAGGATGCGGGGCTTGTTATCAGGTAAAATGCACAGAAAATGCTGCATGCTCGGGAAACCCTGTTAGTGTGATGATAACTGATGAATGTCCCGGTTGTAACTTAAGATCAATCCATTTTGATCTCAGTGGAACTACCTTTGGTTCCATGGCAACTCCAGGCCAGGCATATAATCTTCGCAATGCTGGAGAGCTTAATATTCTTTATAGAAGGGTTGCATGCTCCTATGGGAACTCTATAGCCTTTATCATCGATAACGGGGCCAACCCATATTATTTTGCTACAGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGACATTGAGTTGAAGCAAGTTAATTCTGACACGTGGCTTCCAATGGAGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTCTACAATTACAGGCGCCATTCTCTATTAAGCTCACAGAAGAAGGCAAGGGCTATTACAAGACCATTGTGGCTGATAGTGTAATTCCGCATGACTGGAAACCTGGCCAAAAAGGGAGTGTTGTGGAAGAACCAAGCAAGGGGGACCAAGAGAAGGATAACATAGAGAAGGTGGACATGGAAATGGGGAAGATTTGA 861 0.4425 MQVLRYMSFVVVFYSLLLNPCHCLNLNLFNASKIQNEDQWQVAAATWYGLPEGGGSDGGACGYGDSVEKPPLSKIVSAGGPSLFRGGIGCGACYQVKCTENAACSGNPVSVMITDECPGCNLRSIHFDLSGTTFGSMATPGQAYNLRNAGELNILYRRVACSYGNSIAFIIDNGANPYYFATEIEYENGDGDLVDIELKQVNSDTWLPMERSWGARWALNLGLQLQAPFSIKLTEEGKGYYKTIVADSVIPHDWKPGQKGSVVEEPSKGDQEKDNIEKVDMEMGKI 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01790 286 MobiDBLite consensus disorder prediction 256 286 - -
Pumo7g01790 286 MobiDBLite consensus disorder prediction 265 286 - -
Pumo7g01790 286 CDD DPBB_EXPB_N 40 161 - -
Pumo7g01790 286 Gene3D - 26 161 IPR036908 -
Pumo7g01790 286 SMART dpbb_1 76 156 IPR007112 -
Pumo7g01790 286 PANTHER EXPANSIN-B3 17 258 - -
Pumo7g01790 286 Pfam Expansin C-terminal domain 167 251 IPR007117 -
Pumo7g01790 286 Gene3D - 162 259 IPR036749 -
Pumo7g01790 286 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Pumo7g01790 286 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Pumo7g01790 286 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Pumo7g01790 286 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Pumo7g01790 286 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Pumo7g01790 286 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Pumo7g01790 286 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Pumo7g01790 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Pumo7g01790 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Pumo7g01790 286 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pumo7g01790 286 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Pumo7g01790 286 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pumo7g01790 286 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pumo7g01790 286 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pumo7g01790 286 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Pumo7g01790 286 SUPERFAMILY Barwin-like endoglucanases 37 164 IPR036908 -
Pumo7g01790 286 Pfam Lytic transglycolase 77 155 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01790 Pumo-Chr7 47148103 47152229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01790 19 257 Expansin Gene Family AT1G65680 56.198 1.30e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01790 - - gmx:100786475 452.981