Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01789 ATGGAGAAGCACAAGTGCAAGCTTTGTTTGAGGAGTTTCGCGAACGGAAGAGCGTTGGGAGGTCACATGAGGTCTCACATGATGAACCTACCTGTTCCTCCGAAACAGAGCGAGTTCGTGCCGATTCAACTCAGTTTTGAGGCCGAGTCGTCTCCTTCTCAATCTTCATCTTCTTTCTATGGTCTCAGAGAGAATCCGAAGAAAAGCTTTCGTTTTGCAGATCCTGAATTTTCGTTTGCAGCAGACACAGGCTCCGTGATCCTGCAAGATAGGGAGAGCGAGACCGAGTCGTCGAGGAATCCAACTCGGAGACGATCCAAGAGAGCGTGGCAACTCGGTGGCGAAACAGAGAAGAAGATGAAACTCTGTATTAACAAGAACGAGTCTGCAAGCTCTGCTTCCGACACGACAACGGAAGAAGACGTCGCATTCTGTCTCATGATGCTGTCTCGCGACAAGTGGAAGGAATATGGACATGAAGAGGACACGGAACAATACAAGTATGATGATGAGATTGAAGTCGAAGAAGATGATGACGACGAAGACGAAGAGGAAGACGGTTATGAATCCGAAGAGGAGCTGAAATCTGTTAAGAAGAGCAACAAGGTGCGAGGGAGGTACAAATGCGAAACGTGTGACAAGGTTTTTCGATCTTACCAGGCTCTTGGAGGTCATCGAGCGAGTCACAAGAAGATCAAGTTGAACTGTGAAGCTGAACTCGAAGTTGTTGAGCATGTCGTCGTCGTGGAGAAGAAAATTCACGAATGCCCGGTTTGTTTTCGAGTTTTCGCTTCGGGTCAGGCTCTGGGTGGACACAAGAGAACACATGTGATTGGTTCTGCAACTGCAACTACAACAACCGCAACTGCAATCGCGACCGCAACTGTTTCCGTTAGAACTTCCCCAACTGTTTCGGTTAGAACTTCTACTAGAGTTGGAGATAGTTTCATAGATCTCAATCTCCCTGCTCCAATGGATGAGGAAGATGATATTAGCCAGTTCGATGACTCTGCTGTTTCGGATGCAGAGTTTGTTGAACTTTGA 1044 0.4732 MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKQSEFVPIQLSFEAESSPSQSSSSFYGLRENPKKSFRFADPEFSFAADTGSVILQDRESETESSRNPTRRRSKRAWQLGGETEKKMKLCINKNESASSASDTTTEEDVAFCLMMLSRDKWKEYGHEEDTEQYKYDDEIEVEEDDDDEDEEEDGYESEEELKSVKKSNKVRGRYKCETCDKVFRSYQALGGHRASHKKIKLNCEAELEVVEHVVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSATATTTTATAIATATVSVRTSPTVSVRTSTRVGDSFIDLNLPAPMDEEDDISQFDDSAVSDAEFVEL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01789 347 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Pumo7g01789 347 Pfam C2H2-type zinc finger 4 27 - -
Pumo7g01789 347 Pfam C2H2-type zinc finger 206 231 - -
Pumo7g01789 347 Pfam C2H2-type zinc finger 254 276 - -
Pumo7g01789 347 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Pumo7g01789 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pumo7g01789 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Pumo7g01789 347 MobiDBLite consensus disorder prediction 166 190 - -
Pumo7g01789 347 SUPERFAMILY beta-beta-alpha zinc fingers 206 276 IPR036236 -
Pumo7g01789 347 Gene3D Classic Zinc Finger 204 276 - -
Pumo7g01789 347 MobiDBLite consensus disorder prediction 83 109 - -
Pumo7g01789 347 MobiDBLite consensus disorder prediction 92 109 - -
Pumo7g01789 347 MobiDBLite consensus disorder prediction 161 195 - -
Pumo7g01789 347 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 345 IPR044303 GO:0006355
Pumo7g01789 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 276 IPR013087 -
Pumo7g01789 347 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pumo7g01789 347 SMART c2h2final6 254 276 IPR013087 -
Pumo7g01789 347 SMART c2h2final6 4 26 IPR013087 -
Pumo7g01789 347 SMART c2h2final6 207 229 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01789 Pumo-Chr7 47118069 47119529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01789 1 332 C2H2 Transcription Factor Family AT3G60580 44.540 2.28e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo7g01789 zf-C2H2_6 6.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01789 - - gmx:100776462 442.58