Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01786 ATGCCTTCTCTCTCTACCTCTGATACTGTCACCGATCCCACCCCCAATGAAAATAAGAACCAATCCCTAACTGAAGAGCCCTTCATTGCCAACAAAAGCGATTCCAATCTGAAACCCCTCGACCAAGATGGGGTTTCGCGGAAGAAGAACAACAACAAGAAGCGCAAGGTGGAGCAACGTTTATTAATGGAAGCAGAAGAAGAAGAAAACAATGCGGGTCCCTTAAGAAGAAGCGCAAGGCTTCAGAAGAAGAGGAGAATCGATTCGCGCCATGATTCTCATTTGGGTCGCACCTCTCAGGTTGACTGCCATGCTACACAAATTATTACAAGGGAGTATGAAAAATTATTACAAAGGCGCAACACTATAAATGGACAACAGAGTGGCCAGATTCCTACTTCTCAATTGAAATTAACAGATCAACCTGAGAAAGTTCAGGAGTGTGAGAAAAATGGATGCCCCACACAAAATATGGCCTCTGGGGTTATAGTTGATAATCAAAAGAAGGAAATACAGCTGCAAAATAATGTAGGAAACATTTCTGAGGTTCCGGATGAAGTTCCTGAGGGGAAAACCATAGATAACTTTGCTGCAAGTGGTCGAGGATTGAAGTGGAAGAAAGGAGGAGTAAAAGGAGGTAAATACATGAGAACTAATGATGGTTCAAAGCCAGTGGAACTTTCAAAACCTGCACAAATTGCATCTTTTCATTGTAAGTTGTGTGATGTTAAATGTTACTTACAAGTTAATTACAAGAGTCATTTGAATGGGAAAAAGCACTTACATAAACTAAGGTGTGCTCGTGATCACCAAGTTTCGTTAGGAGCAGGTCTGCAAGCTGTGTCTGGGGGACTCTTGGGGCTTCAAACACCTAAGCCACCTAAAATCAATGCTCTGTCTAATCCAATTAATGCTCAAGACCAACAAGGTGATAATAATCCACAGGTACTTTCAAAGCCAGTGGAACTTTTAAAACCTGCACAAATTGCATCTTTTCATTTTTCGTTAGGAGCAGGTCTGCAAGCTGTGTCTGGGGGACTCTTGGGGCTTCAAACACCTAAGCCACCTAAAATCAATGCTCTGTCTAATCCAATTAATGCTCAAGACCAACAAGGTGATAATAATCCACAGGTACTTTCAAAGCCAGTGGAACTTTCAAAACCTGCACAAATTGCATCTTTTCATTGTAAGTTGTGTGATGTTAAATGTTACTTACAAGTTAATTACAAGAGTCATTTGAATGGGAAAAAGCACTTACATAAACTAAGGTGTGCTCGTGATCACCAAGTTTCGTTAGGAGCAGGTCTGCAAGCTGTGTCTGGGGGACTCTTGGGGCTTCAAACACCTAAGCCACCTAAAATCAATGCTCTGTCTAATCCAATTAATGCTCAAGACCAACAAGGTGATAATAATCCACAGGTACTTTCAAAGCCAGTGGAACTTTCAAAACCTGTAGAAATTGTGCCTTTCACATGTGAGTTGTGCGATATTAAATTTAGCACACAAGCTGATTACAAGAGTCATTTGAATGGGAAAAAGCACTTAAAAAGACTAAGGTGTGCTTGTGATCACCAAGTTTTGTTAGGGGCAGGTCAGCAAGCTGTGTCTGGGGGACTCTTGGGGCTTCAAACACTTAAGCCATCTGAAATCAATGATTTGTCTGCAATTAATGCTCAAGACCAACAAGTTGATAATAATCCACAGGTACTTTCAAAGCCAGTGGAACTTTCAAAACCTGCAGAAATTGTGTCTTTTACATGTGAGTTGTGCAATCGTAAATGTAACTCACAAGTTCATTACCTGAGCCATCTGAATGGGAGAAAGCACTTATATAGACTAAAGCTTGCTCGTTATCACCAAGTTCTGTTTGGAGAAGGTCAGCAAGCTGCGTCTGGAGGACTCTTGGGGCTTCAAACCCTTAATCCACCTGACATCAATGACCTGTCTAATGCAATTGATGCTCAAGTCCAACAAGGTGATGGTAATAATCCACAGGTACTTTTGGCTCAGCTCCTGATGACGGTACTATCTAAAACACAAGTTCCAGCAACAGCACCAGTGCCAGGTGCTGTGGCTGCTGAGATACCAGCCCCCACATCTATGGCTGGACCAAGTTCTGAATCCCAGTTGTCGCAGACACAAGTATCAGAAATCACAGCACATGTTGGGATGGAAAATCCTTCCGGGGAAACAAAAACTGAGATACCAGCACCCTCATCTATGGCTGGACCAAGTCCTGAATCCCAGTTGCAGACACAGGTATCAGAAATCACAGCACATGTTGAGATGGAAAATCTTTCTGGGGAAACAAAAACTGAGGTGTTACCTGTCCCCCCAGGGTCAAATGCTCAGCCAGATTCATGGCAGGCTGACCCGCTGGCCCACCAGATTTGA 2394 0.4277 MPSLSTSDTVTDPTPNENKNQSLTEEPFIANKSDSNLKPLDQDGVSRKKNNNKKRKVEQRLLMEAEEEENNAGPLRRSARLQKKRRIDSRHDSHLGRTSQVDCHATQIITREYEKLLQRRNTINGQQSGQIPTSQLKLTDQPEKVQECEKNGCPTQNMASGVIVDNQKKEIQLQNNVGNISEVPDEVPEGKTIDNFAASGRGLKWKKGGVKGGKYMRTNDGSKPVELSKPAQIASFHCKLCDVKCYLQVNYKSHLNGKKHLHKLRCARDHQVSLGAGLQAVSGGLLGLQTPKPPKINALSNPINAQDQQGDNNPQVLSKPVELLKPAQIASFHFSLGAGLQAVSGGLLGLQTPKPPKINALSNPINAQDQQGDNNPQVLSKPVELSKPAQIASFHCKLCDVKCYLQVNYKSHLNGKKHLHKLRCARDHQVSLGAGLQAVSGGLLGLQTPKPPKINALSNPINAQDQQGDNNPQVLSKPVELSKPVEIVPFTCELCDIKFSTQADYKSHLNGKKHLKRLRCACDHQVLLGAGQQAVSGGLLGLQTLKPSEINDLSAINAQDQQVDNNPQVLSKPVELSKPAEIVSFTCELCNRKCNSQVHYLSHLNGRKHLYRLKLARYHQVLFGEGQQAASGGLLGLQTLNPPDINDLSNAIDAQVQQGDGNNPQVLLAQLLMTVLSKTQVPATAPVPGAVAAEIPAPTSMAGPSSESQLSQTQVSEITAHVGMENPSGETKTEIPAPSSMAGPSPESQLQTQVSEITAHVEMENLSGETKTEVLPVPPGSNAQPDSWQADPLAHQI 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01786 797 SMART ZnF_U1_5 487 521 IPR003604 GO:0003676|GO:0008270
Pumo7g01786 797 SMART ZnF_U1_5 233 267 IPR003604 GO:0003676|GO:0008270
Pumo7g01786 797 SMART ZnF_U1_5 391 425 IPR003604 GO:0003676|GO:0008270
Pumo7g01786 797 SMART ZnF_U1_5 582 616 IPR003604 GO:0003676|GO:0008270
Pumo7g01786 797 MobiDBLite consensus disorder prediction 56 74 - -
Pumo7g01786 797 SUPERFAMILY beta-beta-alpha zinc fingers 388 424 IPR036236 -
Pumo7g01786 797 SUPERFAMILY beta-beta-alpha zinc fingers 584 617 IPR036236 -
Pumo7g01786 797 ProSitePatterns Zinc finger C2H2 type domain signature. 587 609 IPR013087 -
Pumo7g01786 797 ProSitePatterns Zinc finger C2H2 type domain signature. 492 514 IPR013087 -
Pumo7g01786 797 SUPERFAMILY beta-beta-alpha zinc fingers 488 519 IPR036236 -
Pumo7g01786 797 MobiDBLite consensus disorder prediction 723 797 - -
Pumo7g01786 797 MobiDBLite consensus disorder prediction 1 98 - -
Pumo7g01786 797 SMART c2h2final6 490 514 IPR013087 -
Pumo7g01786 797 SMART c2h2final6 236 260 IPR013087 -
Pumo7g01786 797 SMART c2h2final6 394 418 IPR013087 -
Pumo7g01786 797 SMART c2h2final6 585 609 IPR013087 -
Pumo7g01786 797 Gene3D Classic Zinc Finger 217 266 - -
Pumo7g01786 797 Gene3D Classic Zinc Finger 561 616 - -
Pumo7g01786 797 Gene3D Classic Zinc Finger 473 520 - -
Pumo7g01786 797 Gene3D Classic Zinc Finger 376 424 - -
Pumo7g01786 797 Coils Coil 48 68 - -
Pumo7g01786 797 Pfam Zinc-finger of C2H2 type 394 418 - -
Pumo7g01786 797 Pfam Zinc-finger of C2H2 type 585 609 - -
Pumo7g01786 797 Pfam Zinc-finger of C2H2 type 490 514 - -
Pumo7g01786 797 Pfam Zinc-finger of C2H2 type 236 260 - -
Pumo7g01786 797 MobiDBLite consensus disorder prediction 742 760 - -
Pumo7g01786 797 SUPERFAMILY beta-beta-alpha zinc fingers 228 266 IPR036236 -
Pumo7g01786 797 PANTHER OS06G0651300 PROTEIN-RELATED 467 699 - -
Pumo7g01786 797 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01786 Pumo-Chr7 47080650 47084349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01786 396 628 C2H2 Transcription Factor Family AT5G61190 22.394 4.32e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo7g01786 zf-met 3.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01786 - - gmx:100794880 259.996