Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01748 ATGGGGACAGAAATTAAAAGAAAAGAAAAGAAAAACATACGTCTCCATTGCGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTGCAACCTATTGCAAGCAATGAAAAGCCTAACGGATCCGGTACATCAAAAGTACAAAATGTCAGTACACAGCAGTGCACATCTCTGGCTAACCCATTAACTGTGAGGGGTATGCAAATAGGGCATTATGCAGAAAATGATGGGCTTCGGTGCTGGTTCAAACCTCATAATGTTGAAACAGATGGGCCTTCTACAGAAGTGAAACCAGAAATTTTACCTTCAGTTGGAGAACTTGGAAACACTTTGATATCACAATTTCATTGCGAGTCTAATGGATCATCTAAGGCTTCCAAAGCAGAGAACTGTAAGGCAGACACAGAAATGCGAGATATATATGAATCATTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACACCTCCACTTTTATTGGGGTCAAGGTCTCGCCATCTTTTACCTAAGCCCCCTAGGTCAACTATTGGCACAAGCTTAGAAGCAAATGCAGGCATGGTATCCCAGATTCGTGTAGCAAGGCCACCTGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCACGTTATTGGCCTAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACGATTGTGCCTCTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGAATGTATGTTTTAGAAGGCGTAACCCCCTGCATTCAGTCCATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTAATGCAGTACAGGAAACACTACCATCTTATATGCCCAATGGTTCTCATTCAAGTCAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAAAAATGGAACTCAGCTGGTGGTGATATGAATTGGCATAACATTGACATGCCCGAAAGCAGGAAAAGAGAGGGGTTGCCGTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGATCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCTCCAACTGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACTGGGGTAAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTACTTATTCCCCCAAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGACAACTAGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACTAAGACTGGAAGCAAGCCAGAGACCAGCCCTGGAACATGAATCTTCAGGACTGGATGCTTTGGCAAATGCGGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAATCGTTACCACCACAAAACATCCTCGGCATAGACCTGGGTGCTCTTGCATTGTCTGTATCCAGCCTCCAAGTGGGAAGGGAAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAGCGACGGTTTAAAACCCTGATGATGCGGAAAAAGAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCGTGGCGGACCAAAGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACACAAGTTGATGGTTTAGAGAATGAAGCAAGGGTGCCAAATGAGTTGGATTCAAGGAGTCAAGACCATGTGGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATCGAGAAGACGTGCAAGCTGGGCCAAACAGCTTGAGCATGACGACTCTTCTTGAAGAAGCAAATCACCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAAAGTGAGGGAAGACACAATGAGGATTGTGGAACCGCTTCGGTTATTCATGAGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGATAAAGAGCAAAACAATTCACTCTCATGA 2568 0.4357 MGTEIKRKEKKNIRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIASNEKPNGSGTSKVQNVSTQQCTSLANPLTVRGMQIGHYAENDGLRCWFKPHNVETDGPSTEVKPEILPSVGELGNTLISQFHCESNGSSKASKAENCKADTEMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTPPLLLGSRSRHLLPKPPRSTIGTSLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSNAVQETLPSYMPNGSHSSQTSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMNWHNIDMPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPNELNPRQLDNLLRLNKEFKKLRLEASQRPALEHESSGLDALANAAILGDDASDSGRTPIVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTQVDGLENEARVPNELDSRSQDHVVAEAAKGQLDLNCQPDREDVQAGPNSLSMTTLLEEANHPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRHNEDCGTASVIHEQESSPEENSGQDKEQNNSLS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01748 855 MobiDBLite consensus disorder prediction 803 818 - -
Pumo7g01748 855 ProSiteProfiles B3 DNA-binding domain profile. 269 370 IPR003340 GO:0003677
Pumo7g01748 855 Gene3D - 247 374 IPR015300 -
Pumo7g01748 855 MobiDBLite consensus disorder prediction 803 855 - -
Pumo7g01748 855 MobiDBLite consensus disorder prediction 831 855 - -
Pumo7g01748 855 MobiDBLite consensus disorder prediction 706 720 - -
Pumo7g01748 855 CDD B3_DNA 267 368 IPR003340 GO:0003677
Pumo7g01748 855 FunFam B3 domain-containing transcription repressor VAL1 247 374 - -
Pumo7g01748 855 Gene3D - 537 593 - -
Pumo7g01748 855 Pfam CW-type Zinc Finger 539 581 IPR011124 GO:0008270
Pumo7g01748 855 MobiDBLite consensus disorder prediction 688 742 - -
Pumo7g01748 855 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 13 807 - -
Pumo7g01748 855 ProSiteProfiles Zinc finger CW-type profile. 534 584 IPR011124 GO:0008270
Pumo7g01748 855 MobiDBLite consensus disorder prediction 186 214 - -
Pumo7g01748 855 SMART B3_2 269 369 IPR003340 GO:0003677
Pumo7g01748 855 Pfam B3 DNA binding domain 269 368 IPR003340 GO:0003677
Pumo7g01748 855 SUPERFAMILY DNA-binding pseudobarrel domain 266 368 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01748 Pumo-Chr7 45926819 45933479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01748 14 824 B3 DNA Binding Superfamily AT4G32010 48.180 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo7g01748 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01748 K09287 - gmx:100778833 1619.36