Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01732 ATGGCGATTTCTCCTGAAACGTTCACAACCCGAAAACGACGACCTTCGGAGGCGTCGTTTAGGTCTCCGAAGATAAACGACCTTAACCTCTTGTACTCTTTGCTTCAACTCGCGGATCAGATATGTTCCCTAAACCTTACAACCACCACCGCGAACCTCCTCTTGAACCGTGTTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTCGAGGAGCTCCTTCGCGTTTCGAATTTGAATCCCGATTCTGTCCTATTCCTTTGCCTCGAGGAAATGTACCTCGTTCTGCACAAGATCAAAACCCTAATCGAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAAATCGAAACGGTGGCGGATAATTTCCACAGGCTCACCGGAGAACTCTCCACGCTCCTCGATGTGTTCCCTCTCCAAGAACTCGACCTAAACGACGACGTTAAGGAGCTAGTTCTCCTCGTCAGAAAACAGTGCTCAGAATCCAAGCCGTTCATCGGTGCCGAACAAATCAACCTCCGGAACGACGTCGTCTCCGTCCTCGACCGGATCAAGAACGAGATCGTCCCCAATCAAGCGCATCTCGCTTCAATCTTCGAGAAATTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATCGAGAGCCTGGAAGAAGAGATTCACAATCGGAGCGAGGAACAATCGAAAACAGATCTCGTGGCCTTGATCGGCCTCGTCCGTTTCGCGAAGTGCGTTCTCTACGGCGCCTCAACGCCGTCGCAGAGAACCGTCACCCTGCGGCGGAACCAGTCGTCAGAGCTGGCAGTTCCGGTGGATTACCGGTGTCCGATAAGCCTCGAGCTCATGCGCGACCCCGTCGTGGTCGCAACGGGACATACCTACGATCGTGTATCAATCAAGCTCTGGATGGATTCAGGACACAACACGTGTCCCAAAACGGGTCAAGCATTATCACACACCGACCTAATCCCCAATCGCGTGCTGCGGAACATGATAGCAGCGTGGTGCCGCGAGCAGAGAATCCCCTTCGAAGCGGAAACGGTGACAGGAAAACTCAACGGCGGAGGAACCAACAAAGCCGCATTAGAAGCCACGCGAATGACGGTGTCGTTTTTGGTCAACAAGCTCAAGGAGAAAGATAATAATGATAATAACAATGTTTCTTTATCCGTAGAAGACACAAACGGCGTCGTTTACGAGCTTCGGGTGTTGGCGAAAACAGATTCGGATAGCCGAGCCTGTATAGCGGAAGCGGGGGCGATTCCGCTTTTGATTCGGTTCCTTTGTGATGAGAACCCGAGCCTGCAGGTTAACGCCGTCACGACGATTTTGAATCTGTCTATCCTTGAAGCGAATAAGACAAGGATAATGGAGACTGACGGCGCGCTTAACGGCGTCGCGGAGGTTTTAATTTCGGGTGCCACGTGGGAGGCCAAGGCGAACGCGGCGGCGACAGTGTTTAGTTTATCCGGTGTGGCGGCGCACAGGAAGAGGCTGGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGGGTTGGCCAAGGGTGGGCCCGAGGGGGCGCGGAGGGACGCGCTGGCGGCGATACTGAACCTGGCGGCGGATAGGGAGACGGTGGCGAGGCTGGTGGAGGGGGGCGTGGTGGGGATGGTGGCGGAGGTGATGGCGGCGATGCCGGAGGAGGGGGTGACGATACTTGAGGCGGTGGTGAAGCGGGGTGGGCTGGTGGCGGTGGCGGCGGCGTACGCCGGGATCAAGAGGCTGGGGGCGGTGCTGAGGGAGGGGTCCGAGAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACCATGTGCCGGAAAGGGGGGTCGGAGGTTGTGGCGGAGCTGGCGGCGGTGCCCGTCGTGGAGAGGGTCATTTGGGAGCTCATGGCGGTGGGGAGTGTCAGGGGGCGGCGGAAGGCGGCGACGCTGTTGAGGATTTTGCGGCGGTGGGCGGCGGGGCTCGACGGTGGCGAGTCTGAAGGGTTCACGACAACTAACATGGTTGCTTCCTCAACTACTGTGGTTGTTCCAACGACCACCACTTCGTTAGCACAGTAA 2094 0.5702 MAISPETFTTRKRRPSEASFRSPKINDLNLLYSLLQLADQICSLNLTTTTANLLLNRVSSSTIRKTQLLGVVFEELLRVSNLNPDSVLFLCLEEMYLVLHKIKTLIEDFSNGSKFNLLMQIETVADNFHRLTGELSTLLDVFPLQELDLNDDVKELVLLVRKQCSESKPFIGAEQINLRNDVVSVLDRIKNEIVPNQAHLASIFEKLEIRDASSCRAEIESLEEEIHNRSEEQSKTDLVALIGLVRFAKCVLYGASTPSQRTVTLRRNQSSELAVPVDYRCPISLELMRDPVVVATGHTYDRVSIKLWMDSGHNTCPKTGQALSHTDLIPNRVLRNMIAAWCREQRIPFEAETVTGKLNGGGTNKAALEATRMTVSFLVNKLKEKDNNDNNNVSLSVEDTNGVVYELRVLAKTDSDSRACIAEAGAIPLLIRFLCDENPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLISGATWEAKANAAATVFSLSGVAAHRKRLGRKTRVVSGLVGLAKGGPEGARRDALAAILNLAADRETVARLVEGGVVGMVAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPVVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGESEGFTTTNMVASSTTVVVPTTTTSLAQ 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01732 697 SUPERFAMILY ARM repeat 400 659 IPR016024 -
Pumo7g01732 697 SMART arm_5 414 454 IPR000225 GO:0005515
Pumo7g01732 697 Pfam Armadillo/beta-catenin-like repeat 415 453 IPR000225 GO:0005515
Pumo7g01732 697 CDD RING-Ubox_PUB 276 328 IPR045210 -
Pumo7g01732 697 Pfam U-box domain 275 346 IPR003613 GO:0004842|GO:0016567
Pumo7g01732 697 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Pumo7g01732 697 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Pumo7g01732 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 353 IPR013083 -
Pumo7g01732 697 Coils Coil 212 232 - -
Pumo7g01732 697 FunFam RING-type E3 ubiquitin transferase 362 554 - -
Pumo7g01732 697 Gene3D - 361 587 IPR011989 -
Pumo7g01732 697 PANTHER U BOX DOMAIN-CONTAINING 80 660 - -
Pumo7g01732 697 SUPERFAMILY RING/U-box 271 348 - -
Pumo7g01732 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Pumo7g01732 697 FunFam RING-type E3 ubiquitin transferase 270 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01732 Pumo-Chr7 45705208 45707936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01732 11 692 U-box Gene Family AT5G01830 55.507 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01732 - - gmx:100805405 1106.28