Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01699 ATGAAAATGATTCAGAATGGTTGTCATGTAGCTACAGCACTAGAGTTAAGTTTGGGCATTGCTCCTGGCAAGAACTTTGTTGATTCAATTTCTAGTGAATCTACGTTGTGTTTTGCAAGCTCATATGTTGGGTTAGAACGTGCAAACATGCAGGCAAGAGCAAGTGTTGGAGATGGTTTTCGAGTAAGTGCCTCAAGTACTCCTAGTAATTCCAGTGGTGGATCTGACCCAGATGACATAGACTCATTTCGTGATGTTTATATATGGGGGGAGGTTTTGGCAAATGGGGTTTCACCTGATGGGATTGGAACTCAAATCCCTTCTAAGACAGATGTATTGATTCCTAAGCCTTTAGAGTCAAATGTTATTCTTGATGTTTGTCAAATTGCAACTGGTGCAAACCACATTGCTATAGTAACTAAGCAAGGACATGTTTTTACTTGGGGAAAAGAATCAGGGGGAAGACTTGGTCATGGAATTGATAAAGATTTTGGCTCTCCCTGTCTAGTTGAGTTTCTAGAAGGTACAAATTTTGACTTTGTTTCATGTGGGGAGTATCATACAGGTGCTATATCTAAGTCTTATGAACTTTATATGTGGGGTGATGGAACACATAATGCTGGACTTCTTGGACATGGTTCTGAGGCTAGCCATTGGATACCAAAAATGGTAAATGGCCCTTTGGAAGGACTTCAAGTTGTGTCTATTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCTAGTGGAAAACTTTTTACCTTCGGTGATGGGGCATTTGGTGTATTAGGCCATGGAGATCAAGAGAGTGTGTGGTATCCAAAGGAGGTACAACTATTAAGTGGATTAAAGACTATGAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTGTAGAGGTTGCATTTCAATCTGGTTCAAATACTTCATCATGGAAGCTTTTCACATGGGGCAATGGAGACAAACATTGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCTACTCGTGTTGCTCCACTTATGGAATATAATTTTCACCAAGTAGCATGTGGTCACACAATGACTATTGCTCTCACTACATCTGGCCATATCTTTAGCATGGGAGGCACAGAACATGGTCAATTAGGAAATCCTAAGTCTATTGGAAAAATACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAGTTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTCTTGACAACTAAAAGTGAACTATACACATGGGGAATGGGTGCTAATGGAAGATTGGGACATGGAGATGTAGAAGATAGGAAATCTCCTACGTTGGTGGTAGCCTTAAAAGATAGGAATATAAAAAATGTCTCATGTGGCTTTAATTTTACATCATGTATATGCATCCATAAATGGGTCTCTGGAACTGATCAATCTGTTTGCTCTGGTTGTCGACAAGCATTTGGTTTAACAAGGAAAAGGCATAATTGTCACAATTGTGGATTGGTCTTCTGCCATGCTTGTAGTTCTAAAAAGGCATTGAAAGCAGCATTGACTCCAACGCCAGAAAAACCTCATCGTGTGTGTGATAATTGTTATGTTAAGCTTAAAGTTGTTGAGGATAATGGTGCTTCCAAGTTAGATAAAAAAGCTACTCCGTCTCACTATTCCATAAATGGAAAGGAAAGATCAGGCCAAGGAACAATAAGGTCTACAAGAACTCTCTTGTCTCCCATCACTGAACCAATTAAATACCTTGAGATAAAGAATAGTAATCCTGGAAGCAAAAATAATTGTACTTCATTTATACGAGCTTCTCAAATTCCATCACTTATACAATTGAAAGATATTGCATTTCCAAGTTCACTTAGTTCTTCTCAAAGTGTTTTAAAGCCTTCTTCTATACCTCCTAGTCCACCACAAACTCCACCACCACATACCAATTCAGGGGCCATATTCACAAACACAAGAAGACAAAGCCCTACACGTCCTGTTAGTCCTAGATTCTTTGGAAGTCTTAACAACAGTTTAAGAAGGACAAATGATGTTTTGAAACAAGAAGTTTCCAAGTTACAGAAACAAATTCAAAGTTTGAAGCAGAGAAGTGACATGCAAGATGTGGAAATTAAGAAGCTTAACAAAAAGGTTGTGGAAGCTACTGCCTTTTCCGCAGTGGAATCTTCTAATCATAGAGTAACAAAAGAATTTTTTGAATCTACTATATATCAGTTGAACGAAATAACTGAGAAGCTGCCACAAGAAATTCCAGAAAGCAAAACTTTGACAACTGTGCTTACTCAAGCTGAAGATTTTCTTAAAGAAATTTTAGAATCTGAAACATCTTCATCATCAAAGTTGGAGTCTAAGCAACTAAATGCACCTGATAAACCTAGCTTGAATAATGGCTCTTCCAAACTACAAAAAAATAGAGTTGAAGAAAATGTGGATGTTGCAGGAGTCAATCCTTGTCAAGATGAAGGAAAATTCCTTGAAGAAAGTAATAAATCAAACTTGCAGCCAAAGCAACAAAATGCACTTGATACACCTACCTTAGATGATGTCTATTCCAAACTACAAAAACAAAGAATACAAGAAAATGTGGATGCTACTGGAGCCAATCCTTATCATGATGAAGAAAATTTCCTTGAAGAAAGCAATAAGTCAAAGTTGGAGTCTAGGCAACAAAATATACCTAATATACCTACTTCAGATACTAGCACTTCTGAAATGCAAGAACACAAACTAGAAGAAAATGTTGATGTCGTAGAAGTTGACTCTTGTCAAGATAGAGAAAATTTCCATGAAGAAAGTAATGGAACAAAGTTGGAGATTGAATACCAAAATGCACCTAATATACTTGCCTCAATTAGTGATGTTTCTGAAATGCTAGAGGATAAACTAGAGGAAGATGTTGAGGTTGCAAGAGTTGATCAATCTCAAGCAGAAGGACATGTCCCTGAAGAATGTAATGGGTCATTTGCATCTAGTGTTGGCATAACAATTACTTCACAAAATTCAGACAATGATTCAAGATCATTGGACTCTTCAAGACTTGGGAAACAAGGAGAGATACAAGTTATTGAAAAATTTGAACATGGTGTTTATGTGCTACTCATGTTATTATCTGATGGTACCAAAATTTTTAAACGAGTTAAATTCAGTAAACGAAGGTTCACTGAAAATCAAGCAGAAGAATGGTGGAACCAAAACAAAGGTAGGGTTCTTAGGAAATATTGTCCAACACATCAAAAACTAACAATTGGACCATCTAATGTCACATCATATGTTAAAGAAAATATTGAGTCATCTCCTAAATAG 3309 0.3756 MKMIQNGCHVATALELSLGIAPGKNFVDSISSESTLCFASSYVGLERANMQARASVGDGFRVSASSTPSNSSGGSDPDDIDSFRDVYIWGEVLANGVSPDGIGTQIPSKTDVLIPKPLESNVILDVCQIATGANHIAIVTKQGHVFTWGKESGGRLGHGIDKDFGSPCLVEFLEGTNFDFVSCGEYHTGAISKSYELYMWGDGTHNAGLLGHGSEASHWIPKMVNGPLEGLQVVSIACGTWHSALATSSGKLFTFGDGAFGVLGHGDQESVWYPKEVQLLSGLKTMKVACGVWHTAAIVEVAFQSGSNTSSWKLFTWGNGDKHCLGHGNKETYLQPTRVAPLMEYNFHQVACGHTMTIALTTSGHIFSMGGTEHGQLGNPKSIGKIPTLVQDKLLGEFVEEISCGAHHVAVLTTKSELYTWGMGANGRLGHGDVEDRKSPTLVVALKDRNIKNVSCGFNFTSCICIHKWVSGTDQSVCSGCRQAFGLTRKRHNCHNCGLVFCHACSSKKALKAALTPTPEKPHRVCDNCYVKLKVVEDNGASKLDKKATPSHYSINGKERSGQGTIRSTRTLLSPITEPIKYLEIKNSNPGSKNNCTSFIRASQIPSLIQLKDIAFPSSLSSSQSVLKPSSIPPSPPQTPPPHTNSGAIFTNTRRQSPTRPVSPRFFGSLNNSLRRTNDVLKQEVSKLQKQIQSLKQRSDMQDVEIKKLNKKVVEATAFSAVESSNHRVTKEFFESTIYQLNEITEKLPQEIPESKTLTTVLTQAEDFLKEILESETSSSSKLESKQLNAPDKPSLNNGSSKLQKNRVEENVDVAGVNPCQDEGKFLEESNKSNLQPKQQNALDTPTLDDVYSKLQKQRIQENVDATGANPYHDEENFLEESNKSKLESRQQNIPNIPTSDTSTSEMQEHKLEENVDVVEVDSCQDRENFHEESNGTKLEIEYQNAPNILASISDVSEMLEDKLEEDVEVARVDQSQAEGHVPEECNGSFASSVGITITSQNSDNDSRSLDSSRLGKQGEIQVIEKFEHGVYVLLMLLSDGTKIFKRVKFSKRRFTENQAEEWWNQNKGRVLRKYCPTHQKLTIGPSNVTSYVKENIESSPK 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01699 1102 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 732 - -
Pumo7g01699 1102 FunFam PH, RCC1 and FYVE domains-containing protein 1 55 303 - -
Pumo7g01699 1102 Pfam Transcription factor regulating root and shoot growth via Pin3 1022 1075 IPR013591 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 195 211 IPR000408 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 126 139 IPR000408 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 411 432 IPR000408 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 252 266 IPR000408 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 353 371 IPR000408 -
Pumo7g01699 1102 PRINTS Chromosome condensation regulator RCC1 signature 236 252 IPR000408 -
Pumo7g01699 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 143 194 IPR000408 -
Pumo7g01699 1102 Pfam FYVE zinc finger 468 533 IPR000306 GO:0046872
Pumo7g01699 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 288 298 IPR000408 -
Pumo7g01699 1102 Gene3D - 306 467 IPR009091 -
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 623 669 - -
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 779 805 - -
Pumo7g01699 1102 SUPERFAMILY RCC1/BLIP-II 85 469 IPR009091 -
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 546 567 - -
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 881 905 - -
Pumo7g01699 1102 CDD FYVE_like_SF 478 530 - -
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 888 905 - -
Pumo7g01699 1102 ProSiteProfiles BRX domain profile. 1021 1076 IPR013591 -
Pumo7g01699 1102 SUPERFAMILY FYVE/PHD zinc finger 468 538 IPR011011 -
Pumo7g01699 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 364 415 IPR000408 -
Pumo7g01699 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 143 191 IPR000408 -
Pumo7g01699 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 417 464 IPR000408 -
Pumo7g01699 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 249 298 IPR000408 -
Pumo7g01699 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 314 360 IPR000408 -
Pumo7g01699 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 197 245 IPR000408 -
Pumo7g01699 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 363 412 IPR000408 -
Pumo7g01699 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 363 IPR000408 -
Pumo7g01699 1102 Gene3D - 48 305 IPR009091 -
Pumo7g01699 1102 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 472 534 IPR017455 -
Pumo7g01699 1102 Coils Coil 671 712 - -
Pumo7g01699 1102 SMART fyve_4 466 535 IPR000306 GO:0046872
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 644 669 - -
Pumo7g01699 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 195 249 IPR000408 -
Pumo7g01699 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Pumo7g01699 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 250 301 IPR000408 -
Pumo7g01699 1102 MobiDBLite consensus disorder prediction 779 807 - -
Pumo7g01699 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 545 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01699 Pumo-Chr7 45009456 45014880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01699 1011 1075 Major Intrinsic Protein MIP AT1G31880 41.791 5.41e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01699 - - gmx:100798841 1639.78