Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01641 ATGAAGCAAGTGGTGGGAATGGTGGTTTCAAATAAGATGCAGAAATCAGTGGTGGTGGCGGTGGATAGACTATTCTACCACAAATTGTACGACCGATATGTCAAGCGCACTTCTAAATTTATGGCTCATGATGAGCACAACCATTGTAACATTGGTGACCGAGTTCGGTTGGATCCTTCTAGGCCTTTGAGCAAGCATAAGCATTGGGTGGTTGCTGAAATTCTCAAGAAAGCACGTATATATGTTCCGCCATCAATGTCGTTGGTGTCTGAGAATGTCAGCTCCAGCTCCGAAGCACCTGCTTCTTGA 309 0.4531 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYDRYVKRTSKFMAHDEHNHCNIGDRVRLDPSRPLSKHKHWVVAEILKKARIYVPPSMSLVSENVSSSSEAPAS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01641 102 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Pumo7g01641 102 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo7g01641 102 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo7g01641 102 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo7g01641 102 Gene3D - 1 79 IPR012340 -
Pumo7g01641 102 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo7g01641 102 FunFam 30S ribosomal protein S17 1 101 - -
Pumo7g01641 102 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Pumo7g01641 102 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Pumo7g01641 102 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01641 Pumo-Chr7 43114336 43118615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01641 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 3.68e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01641 K02961 - gmx:100500188 169.859