Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01628 ATGATGCACCAAGAAATTCTTGAATCCTCATCATGGTCATCAATCTACGAAGCCAATAGCTCAACTATTGATGATCATCAATTTGAACACTATGGCTTCGAAGTTGATGGCCATGTGAGTGCTTCAAGGTTCAATTCCTTGTTCAACATTTCAGAGGACACTTCCTCTGAAGCCTCCTCATCACTCCCTTTTCCTTCAATCTTGTTCATCAATGATAATTTTTTCCAATACCCAATTGAAAAAGACACCCTTCAACTCCCAGCATTGATGGATGTCTATGATTTGTCAATGGATTTTGATGATTTTGATCCCATCATAAGGGATCATCAAGAAAGTGAGGGAGAAGATGCTATGTCTTTGAACTCAGATTTGTCATCAAATCAAAAACCACTTACCTTGCCTCAACAAGGCATGGAAATTGAAAACCATGTGAGTCTTCCACATTTGTTGGAGGCTTATGGAGAGGCCATATATGAAGGGAAGAAATCACTTGCTGAAGTGATCTTGAGAAGCATGAGGCAGAAAGTTAGTCCAGTTGCTGAACCTCTTGAGAGGCTTGCGTTCTATTTGTGCCAAGACATGAAAACAAGAGAAGATGATTGTTATCTGACACAAGAGGCTTCCAAGAACTATGTGGAAGCGTTTAAGGCCTTCTACCAAGGCCTCCCACATGGAAAACTTGCTCACTTTGTGGCTAATTTGGCAATTCTTGAGGCCTTGCCACATGATTCTGAAGTCATACACATAGTGGATTTTGACATGGGAGAAGGGCCTCAATGGCCTCCATTGTTTGAGGCCATTGCAACCCTTCACAAAACATTGAGGTTGACATCAATCAAATGGGGAGAGGAAGGTTTTGAGGGTGTTTCCTCTCCATGGAAGTTTGAGGAAATTAGAAGGGTGCTTCATGAGCATGCCAGATCTTGTGGGTTGAAGTTGATGGTGGAGGAGAAGGGGATGGAGGAAGTGGTTAATGAGGTTAAAAATATGAACAAAAGGGTTGGAAGTGGAAGGAGAGAATTTTTGGCCTTCAATTGCATGGTGGGTCTTCCACATATGGGGAGAGGAAGGAGTACAAGGCTTGTCATGGAGTTTCTGAATTTGATCAAGAGTTGTGGAAGCAGGGGAATTGTCACTTTTGGGGATGGGAGAGCTTGTGAGAAGTTGGAACATGACTTGGAATTCATGTCATTTTTTGAGAGGCATTTGGTGCATTACAAGGCCTTGTTAGAGTCAATTGAATCACATTTCCCAAACCATTTCATAGATGCAAGAACTGCCATGGAGTGCCTATTTGTGGCACCTTATATCTCTTCTCTTGCTTGGTTGCAAAAGTGGGAGGAGATCAAAGAGGAGTCCCATTTTCAGGCACAGATTGGCTTAGAGGGTTGCAAATTAAGCAATGCAATTTTAATGGAAGTCAGAGAGATGTTGAGTGGATGTGAAGAAGGTTCATATCAGGCCAGGATTGAAGGACAGAATGATAATCAATTGATTTTGGAATGGAAAGGAACCCAGCTAGTAAGAGTTTCAACTTGGAGAAATTAA 1548 0.4186 MMHQEILESSSWSSIYEANSSTIDDHQFEHYGFEVDGHVSASRFNSLFNISEDTSSEASSSLPFPSILFINDNFFQYPIEKDTLQLPALMDVYDLSMDFDDFDPIIRDHQESEGEDAMSLNSDLSSNQKPLTLPQQGMEIENHVSLPHLLEAYGEAIYEGKKSLAEVILRSMRQKVSPVAEPLERLAFYLCQDMKTREDDCYLTQEASKNYVEAFKAFYQGLPHGKLAHFVANLAILEALPHDSEVIHIVDFDMGEGPQWPPLFEAIATLHKTLRLTSIKWGEEGFEGVSSPWKFEEIRRVLHEHARSCGLKLMVEEKGMEEVVNEVKNMNKRVGSGRREFLAFNCMVGLPHMGRGRSTRLVMEFLNLIKSCGSRGIVTFGDGRACEKLEHDLEFMSFFERHLVHYKALLESIESHFPNHFIDARTAMECLFVAPYISSLAWLQKWEEIKEESHFQAQIGLEGCKLSNAILMEVREMLSGCEEGSYQARIEGQNDNQLILEWKGTQLVRVSTWRN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01628 515 ProSiteProfiles GRAS family profile. 137 514 IPR005202 -
Pumo7g01628 515 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 507 IPR005202 -
Pumo7g01628 515 MobiDBLite consensus disorder prediction 117 131 - -
Pumo7g01628 515 MobiDBLite consensus disorder prediction 111 131 - -
Pumo7g01628 515 Pfam GRAS domain family 148 514 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01628 Pumo-Chr7 42572250 42573797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01628 147 514 GRAS Transcription Factor Family AT5G66770 26.972 7.29e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo7g01628 GRAS 2.4e-45 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01628 - - gmx:100791800 812.372