Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01622 ATGGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGCGGAGCCTTTGCACCCAAACCATCATCTGGACCCCACAAGTCAAGGGAGTGTCTGCCTTTGATCCTTATCCTACGAAACAGGCTAAAGTATGCTCTAACATATAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATATCCTGCTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAGTTTCCGTCTTCTGTATGACACAAAGGGCCGTTTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGTTTAAGCTCTGTAAGGTTCGATCTGTTCAATTTGGTCAGAAGGGCATCCCCTATTTGAACACATACGACGGACGCACCATCCGCTATCCTGACCCTATAATCAAGGCTAATGACACCATCAAGCTGGACCTGGAAAGCAACAAGATCACTGATTTCATCAAATTTGATGTGGGGAATGTTGTTATGGGCACCGGGCGGAAGGACAGAGGCCGTGTCGGCGTCATCAAGAACAGAGAGAAGCATAAGGGAAGCTTTGAGACCATCCATGTCCAGGATGCAACTGGTCATGAATTTGCAACTCGAATGGGGCATGATGCATATAAAACATGGAGGCTCTGGAAGGAAATGGAATTGAAGAAGGGTTGTGTATCTACTTTGAAAAATGGGGAAGTGGAAGGACTGCTGCTACTTCAAGGACTTGTCTATCTATTCATCAAGAGTATCTTTAGGAAACTCAATTCACTCTTGAGGTTCAAACCTGAAGGGCACAGAAATGGGCTTGTTAATCTTTACAAGGAGATGGAGCCTTTAAAAGAAAATGATGATATACAAGTTATGTGGAAAATGATTCAAGTTCAATCATCAACTCCTCAATCTACCTGCACCGTCAAAAGGACCATAGGTTTTTATATTGGACACTTTGTTTTAGACCAACATGAAATGTTCTTAAGAAACATCATGACAAGTGGTCCTAAAGTTGCTAGATGGATTAGTCCTGGTTTAGAGTGTGCTAAGTAA 1098 0.4299 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKLDLESNKITDFIKFDVGNVVMGTGRKDRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGHDAYKTWRLWKEMELKKGCVSTLKNGEVEGLLLLQGLVYLFIKSIFRKLNSLLRFKPEGHRNGLVNLYKEMEPLKENDDIQVMWKMIQVQSSTPQSTCTVKRTIGFYIGHFVLDQHEMFLRNIMTSGPKVARWISPGLECAK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01622 365 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Pumo7g01622 365 Pfam S4 domain 47 90 IPR002942 GO:0003723
Pumo7g01622 365 CDD S4 51 112 - -
Pumo7g01622 365 Pfam Ribosomal family S4e 95 169 IPR013845 -
Pumo7g01622 365 FunFam 40S ribosomal protein S4 1 117 - -
Pumo7g01622 365 SMART s4_6 42 106 IPR002942 GO:0003723
Pumo7g01622 365 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Pumo7g01622 365 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 224 IPR000876 GO:0003735|GO:0005840|GO:0006412
Pumo7g01622 365 Gene3D - 1 117 IPR036986 GO:0003723
Pumo7g01622 365 Gene3D - 122 172 IPR038237 -
Pumo7g01622 365 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Pumo7g01622 365 Gene3D - 175 225 IPR014722 -
Pumo7g01622 365 CDD KOW_RPS4 175 224 IPR041982 -
Pumo7g01622 365 FunFam 40S ribosomal protein S4-3 175 213 - -
Pumo7g01622 365 FunFam 40S ribosomal protein S4 122 172 - -
Pumo7g01622 365 ProSiteProfiles S4 RNA-binding domain profile. 42 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01622 Pumo-Chr7 42283993 42289958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01622 1 224 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 89.732 4.78e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01622 K02987 - gmx:100500000 443.736