Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01608 ATGGATCATTACACTCCCACCACCACCACCAACCCTGCCTCATCTCAAGCCTCTTCTTCAAAGCCAAGCAGAAACTCAAAGGGTAGTGGTGCCAAAAAATGCAAAGGAGTGAGGCTTTCCACTGATCCACAAAGCGTGGCAGCGAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACAGTGTCTATGTTGGAGGAAGCTATTCAGTATGTGAAGTACCTCAAGACCCAGATTTGGCTTCACCAAACCATGATCAACTTCATGGATGATAACAATAATAACAATGAGTCTTCTTCTTATTCACTACCCTCACCTATGTACCCTAATGATTGCTGCTATTTCCCTAATTCTGAACAGTTCATTAATTCCCCTCATCATCAGCAAAATGCAACACTTGATTATGATAACAACATGCAGAATTTGGCACAATGCAGCAGCTTCTTCCAAGGCGAAGACACAACAACCTACTTTGATGCCTCTTTGAAATATTGGCCAGCTTAA 543 0.4383 MDHYTPTTTTNPASSQASSSKPSRNSKGSGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFMDDNNNNNESSSYSLPSPMYPNDCCYFPNSEQFINSPHHQQNATLDYDNNMQNLAQCSSFFQGEDTTTYFDASLKYWPA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01608 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Pumo7g01608 180 SMART finulus 45 94 IPR011598 GO:0046983
Pumo7g01608 180 MobiDBLite consensus disorder prediction 1 27 - -
Pumo7g01608 180 CDD bHLH_AtIND_like 40 102 - -
Pumo7g01608 180 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 139 IPR045843 GO:0003700|GO:0006355
Pumo7g01608 180 FunFam Transcription factor LAX PANICLE 42 105 - -
Pumo7g01608 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 99 IPR036638 GO:0046983
Pumo7g01608 180 Gene3D - 44 97 IPR036638 GO:0046983
Pumo7g01608 180 MobiDBLite consensus disorder prediction 1 51 - -
Pumo7g01608 180 Pfam Helix-loop-helix DNA-binding domain 49 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01608 Pumo-Chr7 41944589 41945403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01608 33 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.235 2.43e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g01608 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01608 - - gmx:102667489 209.149