Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01573 ATGAAGAATGCGAAGGGCAAGGGAGCATTGAAGGTCTCAAAAGAAGCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCTTTTGGTAAGCCTGACAAGAGTAGTGCACCAAAGGCAATTAAGGAGAAGAAGGCCAAGAAAGATCCCAACAAGCCTAAAAGACCAGCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTACTGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTGTCAAGTGCTGTAAGCTGTGCAATTGTTTTAAATAGTGGCATATTTTTGTTGTCTTTTAAATTAATTTATTCTTCTTCATTGTGTTTTTAG 381 0.4199 MKNAKGKGALKVSKEALKPVDDRKVGKRKAFGKPDKSSAPKAIKEKKAKKDPNKPKRPASAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLSSAVSCAIVLNSGIFLLSFKLIYSSSLCF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01573 126 SMART hmgende2 54 120 IPR009071 -
Pumo7g01573 126 Pfam HMG (high mobility group) box 55 100 IPR009071 -
Pumo7g01573 126 CDD HMG-box_AtHMGB1-like 56 100 - -
Pumo7g01573 126 Gene3D High mobility group box domain 38 101 IPR036910 -
Pumo7g01573 126 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 100 IPR009071 -
Pumo7g01573 126 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 100 IPR031061 -
Pumo7g01573 126 MobiDBLite consensus disorder prediction 1 57 - -
Pumo7g01573 126 MobiDBLite consensus disorder prediction 8 56 - -
Pumo7g01573 126 SUPERFAMILY HMG-box 41 99 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01573 Pumo-Chr7 40181554 40184905 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo7g01573 HMG_box 5.1e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01573 K25507 - gmx:100499704 150.984