Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01572 ATGAAGAATGCGAAGGGCAAGGGAACATTGAAGGTCTCAAAAGAAGCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCTTCTGGTAAGCCTGACAAGAGTATTGCACCAAAGGCAAAGAAGGACAAGAAGGCCAAGAAAGATCCCAACAAGCCTAAAAGACCAGCCAGTGCTTTCTTTGTTTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTGGTGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGTCCAGTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCGAAAAGGAAAGTTGAGTATGAAAAACTTATGAAAGCTTATGATAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCGGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGTGGAGAGGAGGACCACCATGAGGTGGAGGACGAGGACGAAGAGGAGGAAGAGGATGATGAAGATGATGACTGA 525 0.459 MKNAKGKGTLKVSKEALKPVDDRKVGKRKASGKPDKSIAPKAKKDKKAKKDPNKPKRPASAFFVFLEEFRKTFKAENPGVKAVSAVGKAGGEKWKSMSSAEKAPYEAKAAKRKVEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDEASGEEDHHEVEDEDEEEEEDDEDDD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01572 174 CDD HMG-box_AtHMGB1-like 57 116 - -
Pumo7g01572 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Pumo7g01572 174 MobiDBLite consensus disorder prediction 1 59 - -
Pumo7g01572 174 MobiDBLite consensus disorder prediction 139 174 - -
Pumo7g01572 174 MobiDBLite consensus disorder prediction 123 138 - -
Pumo7g01572 174 Gene3D High mobility group box domain 39 140 IPR036910 -
Pumo7g01572 174 Pfam HMG (high mobility group) box 55 123 IPR009071 -
Pumo7g01572 174 SUPERFAMILY HMG-box 40 124 IPR036910 -
Pumo7g01572 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 161 IPR031061 -
Pumo7g01572 174 MobiDBLite consensus disorder prediction 123 174 - -
Pumo7g01572 174 MobiDBLite consensus disorder prediction 87 110 - -
Pumo7g01572 174 SMART hmgende2 54 125 IPR009071 -
Pumo7g01572 174 MobiDBLite consensus disorder prediction 8 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01572 Pumo-Chr7 40167843 40171613 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo7g01572 HMG_box 1.2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01572 K25507 - gmx:100499704 187.193