Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01570 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCAGTTTGCCAATACTCTGGCTTCTGATTATCCAAGAGAACGTGATGGCGCCTGTGTACAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATATAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAAAGGAAAGCCAGTCTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAAAGATATAATAAGAAAGGGGAAAATATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAATTGCAACCACTCGTTATGTCTGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTATGTACGTTGACAAATTACCTCTAATTGTGCCAGATCCTATATTCATGTCTTATCCTCAGCGCTTTTGA 726 0.3967 MRKSFKDSLKALEADIQFANTLASDYPRERDGACVQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKVYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEERKQKDLCATKYKPKDIIRKGKISEIDIEREEECGICMEMNNKVVLPNCNHSLCLKCYRNWHARSQSCPFCRDTLQRVNSGDLWIYMNSNEIDDLASINKENLKRLFMYVDKLPLIVPDPIFMSYPQRF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01570 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Pumo7g01570 241 SMART ring_2 146 183 IPR001841 -
Pumo7g01570 241 PANTHER RING FINGER PROTEIN 41, 151 3 236 - -
Pumo7g01570 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 193 IPR013083 -
Pumo7g01570 241 FunFam RING/U-box superfamily protein 127 193 - -
Pumo7g01570 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Pumo7g01570 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Pumo7g01570 241 SUPERFAMILY RING/U-box 134 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01570 Pumo-Chr7 40134668 40138293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01570 90 184 C3H Transcription Factor Family AT5G01960 30.000 2.28e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01570 K25840 - gmx:100819267 429.483