Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01568 ATGGACACGATGGACGTGGACGAAACTTCTGCATCCAAAGAGGGGAAGCCCGTTTTGGTGATCTTGGTGGGAGCACCTGGGAGCGGGAAGTCCACCTTCTGCGAAGAAGTAATACGTGCCTCTACTCGCCTTTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCCTAAGCAGTGCAACTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGATAGGTGCAATCTTGACAGAGAACAGCGTTCAGAATTTATAAAGCTTGGTGGTGGACCCCAAATTGATGTCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAACCGGATAACATTTTGTCAGAATGAGAGTGATGTCAAAAATGCTCTTAATACATACAGCACACTTGGGCCACTGGATAGTCTTCCACATGGCTGCTTTGGCCAGAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAAGCAGAGGTCCCAGTTGCTGCTGCATCTAGAGAGAGTGGCATTGAAGACCCTACTTCCCAGACTCTGGGGAAAAATAATTCCTGCTGCAAAAATAAGGAAACACTTTCCTCAATTCCAGATAATGCCAACTCAGAGAAAAAGGAAGTAGAGGGCCAAGCAGTTGGCTCTGCTGGTTGCCATGCCAATCAAGTTTCTCTGGATGATATTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCACGAGAAGGCAGCTGATATTATTGTTGAGAAGGTTGCAGAGTTCTCAAATAAGTTTAGGAATGCCAGACTTGTTCTCGTTGACTTGTCTCATAAGTCAAAGATTCTGTCCTTAGTTAAAGCTAAAGTTGCCGAAAAAAACATTGATACCCAAAAGTTCTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAAGGGAGGTTTGCGATGTAATGTCATTGCTAACGCTGCCAACTGGCGGTTGAATCCTGGAGGTGGAGGTGTTAATGCAGCAATTTATAATGCTGCAGGTCCTGAACTGGAGTCTGCAACAAAAGAAAAAGTAAAATCTCTTTCACCTGGGAATGCTGCTGTTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCTTATACTTCACTTTTTGAAGGTTTTGCATCTATTGTGAGGAACCAGACAGGGCAACCAGTGGGAAAAAGTGAAAACCTTGAAAGGAAGTCTTTAGAGTTGCAGGTTCAGTCTGATTGTTGTTCCAGAAATCAATTCACAAAAACTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCGGAAAAAAGCAAAAAATACAAGGGGACTCAGGGTGGCTCTGGATTGACCTCTACTGATTCTAGGGATGAAAAGGTAGATTCAGAGCATAGAAGAACTGAGAGGAGCATGAGTAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCAAATTGCTATGCATCCAGAAAAGCATAAGGGTGACTTGCTTGAAATTTCTGAAGATGTTGTTGTATTGAATGATATGTATCCCAAGGCTAAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGACTGCCTGGCAGATGTCCAGAAGGAGCACGTTCAGTTATTGAACAAAATGCATGATGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGAACGAGAATGCTTCTCTGGTATTTCGTCTTGGTTATCACTCGGCACCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAACACATTTAAAGAATAAGAAGCACTGGAACTCATTTAACACTGGCTTCTTTCGTGACTCGGTAGATGTAATGGATGAGATCTCTAGTGATGGGAAGGCAACATTGAAAGATGATGACAAGCTACTGACTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCACATCCAAACATACCTCGGTTAAAATCACATATTAGCAGCTGCCATTCCCCCTTTCCTGCTCACCTGCTTCAAAACGGACGTTTGGTGCGTGCACCAGGGGAACCTTGTGACAATGTCCAGTAA 2298 0.4286 MDTMDVDETSASKEGKPVLVILVGAPGSGKSTFCEEVIRASTRLWVRVCQDTIGNGKAGNKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGGGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFNRITFCQNESDVKNALNTYSTLGPLDSLPHGCFGQKNPDSKIQVGIMKFLKKAEVPVAAASRESGIEDPTSQTLGKNNSCCKNKETLSSIPDNANSEKKEVEGQAVGSAGCHANQVSLDDIPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKVAEKNIDTQKFFTHVGDITHLYSKGGLRCNVIANAANWRLNPGGGGVNAAIYNAAGPELESATKEKVKSLSPGNAAVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQTGQPVGKSENLERKSLELQVQSDCCSRNQFTKTDQKSKRDADHGSEKSKKYKGTQGGSGLTSTDSRDEKVDSEHRRTERSMSKAWGSWAQALHQIAMHPEKHKGDLLEISEDVVVLNDMYPKAKKHVLVLARTGGLDCLADVQKEHVQLLNKMHDVGLKWAEKFLNENASLVFRLGYHSAPSMRQLHLHVISQDFESTHLKNKKHWNSFNTGFFRDSVDVMDEISSDGKATLKDDDKLLTMELRCHRCRSAHPNIPRLKSHISSCHSPFPAHLLQNGRLVRAPGEPCDNVQ 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01568 765 Pfam Scavenger mRNA decapping enzyme C-term binding 569 679 - -
Pumo7g01568 765 Gene3D - 561 742 IPR036265 -
Pumo7g01568 765 FunFam Transcription factor bHLH140 325 472 - -
Pumo7g01568 765 SMART YBR022w_8 344 486 IPR002589 -
Pumo7g01568 765 Gene3D - 2 176 IPR027417 -
Pumo7g01568 765 MobiDBLite consensus disorder prediction 506 524 - -
Pumo7g01568 765 SUPERFAMILY HIT-like 553 723 IPR036265 -
Pumo7g01568 765 SUPERFAMILY Macro domain-like 325 465 IPR043472 -
Pumo7g01568 765 MobiDBLite consensus disorder prediction 503 556 - -
Pumo7g01568 765 Pfam Macro domain 367 442 IPR002589 -
Pumo7g01568 765 Gene3D Leucine Aminopeptidase, subunit E, domain 1 322 471 IPR043472 -
Pumo7g01568 765 PANTHER APRATAXIN-RELATED 279 739 - -
Pumo7g01568 765 ProSitePatterns HIT domain signature. 648 666 IPR019808 -
Pumo7g01568 765 FunFam aprataxin isoform X2 560 740 - -
Pumo7g01568 765 Gene3D Leucine Aminopeptidase, subunit E, domain 1 226 321 IPR043472 -
Pumo7g01568 765 SUPERFAMILY Macro domain-like 275 320 IPR043472 -
Pumo7g01568 765 ProSiteProfiles Macro domain profile. 332 512 IPR002589 -
Pumo7g01568 765 MobiDBLite consensus disorder prediction 538 555 - -
Pumo7g01568 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 162 IPR027417 -
Pumo7g01568 765 Pfam C2HE / C2H2 / C2HC zinc-binding finger 684 738 IPR032566 -
Pumo7g01568 765 FunFam Transcription factor bHLH140 7 176 - -
Pumo7g01568 765 Pfam AAA domain 19 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01568 8 754 C2H2 Transcription Factor Family AT5G01310 59.304 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01568 K10863 - gmx:100786762 1404.81