Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01558 ATGGAGAAGTTTCCCTTGGTACACACAAGGAACGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTTTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACAGAACTCTTTTCTGTGATAAGAAGAGTCAAAGTTTTGATCCAAGACTGCAAGGATGGAAGTTCTCTTTGGAGTCTCATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTTAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTGAGGTTACTCAATGTAACATCAGATATTAGGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAAAGAAGAGAACAGCTTATACAAGTAATGGCCAACAACAGTTTACAAAAAAAGAAGAACAAAGGGTTCGTTGACTTTGGCAAAGTGGAAGAGATATTAAGCAGCATTGGATTGAGAACCCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGGTGTCATATTCCAAATCCATGATATTCAGAGATGGAGAGAGTGATAGAAATGAAGAATATTGTAAGCCACTATCTTCATTTTTGTATAACAAAGTATATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATTTCACTTGACTTGATGAGGGACCCCGTGATTGTGTCATCAGGGCACACTTATGATAGAACCTCAATTGCACAATGGATAAACTCTGGCCATCAAAGCGGGCAAAGGCTAATTCACATTGCTCTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGACAACAATGTCCCGGTGAATGAGCCTACAACTGAGGGAAACAACAGCAACAACAAAAAGAAGAACTCGAAGGAGGAAGCTATTGATCATATTTCTGCAAACAAAGCAGCTGCGGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGACATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTCGCGAAAACCGGCATGGTTAACCGAAGTGTCATAGCAGAGGTAGGGGCTATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAGCCTTGTAG 1272 0.4112 MEKFPLVHTRNVSSMIRRIKLLSFLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLRLLNVTSDIREQVELLHKQAKRAELLIDPRELQRREQLIQVMANNSLQKKKNKGFVDFGKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRDGESDRNEEYCKPLSSFLYNKVYDSSSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHQSGQRLIHIALIPNYALKSLVQQWCHDNNVPVNEPTTEGNNSNNKKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTAL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01558 423 MobiDBLite consensus disorder prediction 319 338 - -
Pumo7g01558 423 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 423 IPR000225 GO:0005515
Pumo7g01558 423 ProSiteProfiles U-box domain profile. 249 319 IPR003613 GO:0004842|GO:0016567
Pumo7g01558 423 Pfam Armadillo/beta-catenin-like repeat 391 423 IPR000225 GO:0005515
Pumo7g01558 423 Pfam U-box domain 250 316 IPR003613 GO:0004842|GO:0016567
Pumo7g01558 423 SUPERFAMILY ARM repeat 359 423 IPR016024 -
Pumo7g01558 423 Gene3D - 323 423 IPR011989 -
Pumo7g01558 423 SMART Ubox_2 253 312 IPR003613 GO:0004842|GO:0016567
Pumo7g01558 423 PANTHER U BOX DOMAIN-CONTAINING 10 423 - -
Pumo7g01558 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 322 IPR013083 -
Pumo7g01558 423 CDD RING-Ubox_PUB 251 299 IPR045210 -
Pumo7g01558 423 SUPERFAMILY RING/U-box 237 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01558 Pumo-Chr7 39631245 39632516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01558 1 423 U-box Gene Family AT5G01830 33.023 1.12e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01558 - - gmx:100793498 739.954