Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01520 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCAGTTTGCCAATACTCTGGCTTCTGATTATCCAAGAGAACGTGATGGCGCCTGTGTACAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATATAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAAAGGAAAGCCAGTCTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAAAGATATAATAAGAAAGGGAAAAATATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTATGTACGTTGACAAATTACCTCTAATTGTGCCAGATCCTATATTCATGTCTTATCCTCAGCGCTTTTGA 726 0.3939 MRKSFKDSLKALEADIQFANTLASDYPRERDGACVQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKVYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEERKQKDLCATKYKPKDIIRKGKISEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSQSCPFCRDTLQRVNSGDLWIYMNSNEIDDLASINKENLKRLFMYVDKLPLIVPDPIFMSYPQRF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01520 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 193 IPR013083 -
Pumo7g01520 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Pumo7g01520 241 SUPERFAMILY RING/U-box 134 189 - -
Pumo7g01520 241 PANTHER RING FINGER PROTEIN 41, 151 3 236 - -
Pumo7g01520 241 SMART ring_2 146 183 IPR001841 -
Pumo7g01520 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Pumo7g01520 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Pumo7g01520 241 FunFam RING/U-box superfamily protein 127 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01520 Pumo-Chr7 38674528 38678168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01520 90 184 C3H Transcription Factor Family AT5G01960 30.000 1.64e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01520 K25840 - gmx:100819267 430.639