Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01414 ATGGAACCGGAAGAAACCGCCGCCGCCGACGGAAGCGGCGACGAGGGGCTGCTCGGGTTAGACGGCGGCGGCAGCAGCGGAAGGGACCGAGTGAAGGGTCCTTGGTCGCCGGAAGAGGACGCCATTCTGAGCCGTCTGGTAGGCAAATTCGGCGCCAGAAATTGGAGCCTCATCGCGCGCGGAATCAGCGGGAGATCCGGCAAGTCGTGCCGCCTCCGGTGGTGCAACCAGCTCGACCCCGCCGTTAAGCGCAAACCCTTCACCGATGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGTGGAGTTGGACTTGATACGATTAAATTAGAATCTGGCAACTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCGGAAGACACTATATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTAAGTTCTGTGGAGATCATGGATGACAAATCTGATGACAAAGCACAAACTGAGGGTCAATTTCACCATGAAGTCAAGGACCCACCTACCCTTTTTCGGCCAGTACCACGCGTGAGTGCTTTTAATGTGTATCAATCATTTGATGGTACACAGCTTTCAACATCAATCCAAAGGCCTGTTCCGATGCAAGGACCCATTCTACAATCATCAAAACCAGATATGGAATTTTGTAGAATGCTTGAAGGTATTTGTGGTGACCAGACAGTGCCTCACCAGTGTGGCCATGGTTGCTGTGCTGCTCCAAATGGTAGAAAGTCTGAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCCCTATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACTGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGTCAAAATGATGGGCAACACCTCTGGCAGGGTAATACCTAATGGATCTCAAGTACATATTGGCCATTAA 1050 0.4924 MEPEETAAADGSGDEGLLGLDGGGSSGRDRVKGPWSPEEDAILSRLVGKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVGLDTIKLESGNFMEDVSLEKAKASSEDTISCGDVSLKSSEGRDVSSVEIMDDKSDDKAQTEGQFHHEVKDPPTLFRPVPRVSAFNVYQSFDGTQLSTSIQRPVPMQGPILQSSKPDMEFCRMLEGICGDQTVPHQCGHGCCAAPNGRKSESSLLGPEFIEFSEPLSFPNFELAAIATDISNLAWLKSGLESSSVKMMGNTSGRVIPNGSQVHIGH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01414 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Pumo7g01414 349 FunFam MYB transcription factor 32 83 - -
Pumo7g01414 349 Gene3D - 86 132 - -
Pumo7g01414 349 CDD SANT 86 129 IPR001005 -
Pumo7g01414 349 SMART sant 31 80 IPR001005 -
Pumo7g01414 349 SMART sant 83 131 IPR001005 -
Pumo7g01414 349 CDD SANT 34 76 IPR001005 -
Pumo7g01414 349 ProSiteProfiles Myb-like domain profile. 27 78 IPR001005 -
Pumo7g01414 349 MobiDBLite consensus disorder prediction 1 36 - -
Pumo7g01414 349 PANTHER MYB PROTEIN-RELATED 32 186 - -
Pumo7g01414 349 Pfam Myb-like DNA-binding domain 35 92 - -
Pumo7g01414 349 FunFam Transcription factor MYB44 86 132 - -
Pumo7g01414 349 MobiDBLite consensus disorder prediction 187 206 - -
Pumo7g01414 349 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Pumo7g01414 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 78 IPR017930 -
Pumo7g01414 349 Gene3D - 31 83 - -
Pumo7g01414 349 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01414 Pumo-Chr7 35092846 35099246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01414 16 349 MYB Transcription Factor Family AT3G09230 51.304 1.89e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo7g01414 Myb_DNA-bind_6 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01414 K09422 - gmx:100811740 628.246