Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01408 ATGGATTTTGATCCAAGCTTCCGAGGGCCACAATACCTTTCAAGCCTTTTCCCTAGAAACCCATGCTTGATGCCACAAACTCAAACAATGTTCCCATCACAAAACTCCATTCTCGTTCCACCATCACCACCACCCATCTTGTTTCAGCCTAACAACACTTTTCACCTTTTTCAAGACCGCATCATGAATGTGCCTACCCACAACCCTCCCTTTGTGATGCATGGTCCTTCCAACCCTATCACCACCCCTATGCATGGGATGCCAACCCCTTCTTTGGGTGATGGATCTTCCCTAGGTGGCTTTGTTAACGTTCACCATCACCACCCTATGACGTTAGCACCCAACAACAACAAAATGGAAGCTTTGTATGGCCACCACAAAGGCAAACTCATATGGGATTTTTCACAAAAAACCATGACTCATCCATCTGAAGCTTCTTCTTCCAAGTCACCATTACCTTTTTCTCTCTCTAATGTGTATGGACGGGGGATGAATGAATATCACCGGAACATTGATCGAAAGGTAAAGATGAAAAAGGGTACCAACATTGTTAATGATAACATAATCAAAGGGCACTGGACGCTGGAAGAAGATAGTGCTCTTGTGGAATTGGTTAATCAATTTGGGCTGAAGAAATGGTCACAAATTGCAAAGTTATTGCACGGTAGGATTGGGAAACAGTGTAGGGAAAGATGGAACAACCATCTCCAGCCAGACATTAAGAAGGGTCCATGGACCATGGAGGAAGACGAGACTTTAATTAAAGCCCATAAAAAATTTGGAAATAAGTGGTCGAAGATAGCAGACTGGTTGCCTGGTAGGACTGAGAACACCATCAAGAACCGTTGGAATGGCACCAAGCGGCGCAAGAATTGCAAGAAGCATAACAAGAACAAGCAGACCCCTTATGAAGGCTCAATGCTCCATGCCTACGTTAAAAGGGTCACTGCTACTAAAGAAGCTGCAAAAGGACAAAAGAAATCCATAAGTAAGAAGAATAAAGGTGCTGAGGTGTAG 1017 0.4395 MDFDPSFRGPQYLSSLFPRNPCLMPQTQTMFPSQNSILVPPSPPPILFQPNNTFHLFQDRIMNVPTHNPPFVMHGPSNPITTPMHGMPTPSLGDGSSLGGFVNVHHHHPMTLAPNNNKMEALYGHHKGKLIWDFSQKTMTHPSEASSSKSPLPFSLSNVYGRGMNEYHRNIDRKVKMKKGTNIVNDNIIKGHWTLEEDSALVELVNQFGLKKWSQIAKLLHGRIGKQCRERWNNHLQPDIKKGPWTMEEDETLIKAHKKFGNKWSKIADWLPGRTENTIKNRWNGTKRRKNCKKHNKNKQTPYEGSMLHAYVKRVTATKEAAKGQKKSISKKNKGAEV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01408 338 MobiDBLite consensus disorder prediction 319 338 - -
Pumo7g01408 338 Pfam Myb-like DNA-binding domain 193 247 - -
Pumo7g01408 338 Gene3D - 244 305 - -
Pumo7g01408 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
Pumo7g01408 338 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Pumo7g01408 338 FunFam Transcriptional activator Myb isoform A 189 241 - -
Pumo7g01408 338 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
Pumo7g01408 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Pumo7g01408 338 SMART sant 241 289 IPR001005 -
Pumo7g01408 338 SMART sant 189 238 IPR001005 -
Pumo7g01408 338 PANTHER MYB PROTEIN-RELATED 151 300 - -
Pumo7g01408 338 Gene3D - 189 241 - -
Pumo7g01408 338 MobiDBLite consensus disorder prediction 317 338 - -
Pumo7g01408 338 CDD SANT 193 236 IPR001005 -
Pumo7g01408 338 CDD SANT 244 284 IPR001005 -
Pumo7g01408 338 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01408 Pumo-Chr7 35022087 35025095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01408 188 335 MYB Transcription Factor Family AT4G18770 50.980 9.60e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo7g01408 Myb_DNA-bind_6 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01408 - K09422 gsj:114405432 437.187