Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01387 ATGTCAAGTCTACAGATGTGTCATGTTGTGGATTTGGAGCAAGGGAGTAGTCACCACCGTTCTGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCCTGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACCTTTGCTTGTGTTTCTGATGCTGAGGGTGGTGGGGGTGATGCTGCTGGTTCCAGGAGGGCTTCTTCTGTCTCTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGGATTTGCCATCTTGGTTTGGAGAGTGATGATAGTCAAGAGTCTGGAGTTCCCATTGAATTGGGGTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCACTCTGTTGCACGGAATGTTTGTGGGGCAAATGAGGAGACAACACAGACATTGAGTGACAGCAACAATGCTAATGCAGCATCCACAGTCTCAACATCAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTCAATTTTCTCCTTGCTTGTATAGTTTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAATATGCCCTCAACATAA 681 0.4523 MSSLQMCHVVDLEQGSSHHRSVSGSDMSMCFSDAENGSCYSHFYSTNGDPYDDYTFACVSDAEGGGGDAAGSRRASSVSDCSVEVEIESGVPEIKVHLAKVERDCRICHLGLESDDSQESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGANEETTQTLSDSNNANAASTVSTSEPRRFWHGHRFLNFLLACIVFAFVISWLFHFNMPST 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01387 226 SMART ringv_2 104 158 IPR011016 GO:0008270
Pumo7g01387 226 SUPERFAMILY RING/U-box 102 161 - -
Pumo7g01387 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 168 IPR013083 -
Pumo7g01387 226 Pfam RING-variant domain 105 157 IPR011016 GO:0008270
Pumo7g01387 226 PANTHER ZINC FINGER, RING-CH-TYPE 17 225 - -
Pumo7g01387 226 ProSiteProfiles Zinc finger RING-CH-type profile. 97 164 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01387 Pumo-Chr7 34487883 34492173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01387 74 226 C3H Transcription Factor Family AT5G05830 60.759 5.09e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01387 - - gmx:100812277 418.313