LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g01378	ATGATGGGAATGTTATTGCAGCTTCCTTATGTATTGTTTGGGGTACTTACTGCTGTGGTTCTGGTTCCAGCACAGGAGGATCAATCAGGATTCATTAGCATAGATTGTGGTCTACCTGAAGCTTCAAGCTATACTGAGAAGACCACAGGCATATTTTACATTTCAGATGCCCAATTTATAGATACTGGTGTAAGTAAGAGTACTTCACCTGCAGAGAAGAGTACTCATCAACAACAGCTAGCATATGTGAGGAGTTTTCCTAGTGGAGTGAGAAACTGTTACAGAATAAACGTAACAAGTGATACTAAATATTTAATCCGAGCCAGTTTCTTTTATGGAAACTATGATGGTCTAAATCAGCCCCCACAATTTGATCTTCATCTTGGACCTAATTTATGGGACACAGTGAAGTTCAACAAAAATGCATCACTCAGCACAACCAGTGACATCATTTACACTCCATCACTAGATTACATACATCCATGTCTGGTTAACACAGGCAAAGGGACTCCATTCATTTCAGCTATAGAATTGAGGACTTTGAGCAATGCTTCCTATGTCACTGATTCCGCTGAATCATTGGCATGCATCCAGCGATATGATTTAGGATCTATCACCAACTTAGAATACAGGTACAAAGATGATGTTTATGACCGCATCTGGGAGCCTCGTGGAATCAACAAGGGGACACAATTAAGCAGCACACTTAATTCTGGTGATCTATTATACCTGGATTATTATAAACCACCAGAAGTTGTCATGAGCACTGCCGCTGCACCAGTAAATGCTAGTGCTCCTTTAGAGTTCTATTGGGATCCAGATAATGTAAATGAGCAATTCTACATCTACATGTACTTTAGTGAGGTTGAAATTCTGGCAGCAAATGAAACTAGAACATTTAATATCTTGATGAATGGCAAGTTACTATATGGACCCCTGGCTCCTGTATATCAGGTGGCAACTACCATACTTACTGACTCAGCTTTGACTGGAGCCACAAGGTATCTATTTTCTCTTGTTAAGACAGAGATTTCTACCCTTCCACCCATCATTAATGCCGTGGAGATTTATAAAGTAATAGATTTTCCACAATCAGAAACTGAACAAGATGATGTTGATACTATGACAAACATCAAAAACGCTTATGGGGTGGATAGAAATTGGGAAGGAGATCCATGTGGCCCAGTAGCATACATTTGGGAAGGTCTAAATTGTAGTTATGATGGTAATAACACCCGAAGAATCACATCCTTGAATTTGTCTTCAAGTGGACTGACCGGGCAGATATCATTTTTCATCTCCGAGCTCACTATGTTACAGTACTTGGATTTGTCAAACAATAGTTTAACCGGGTCAGTACCTGATTTTCTGACGCAACTGCAATCACTTAAAGTCTTAAACTTGGGGAATAACAACCTTATTGGTCCAATTCCCAGAGGACTGGTTGAAAGATCAAAGGAAGGTTCACTTTCATTGAGCCTGGGGCAAAATCCAAATCTATGTGAATCTGATCCATGCATCCAGCAGACAAATAACAAGCAGCCAGATGCTGATCATCAGAAGAACAAAAATAATATAGTTATTCCGTTAGTAGCATCAGTTGCTGGAATTTTGGTGCTCCTAATAATTGTAGCAGCAGCTATAATCTGTGGCCCTAAAAAGAGAAAACCACAAGCATCTGTGAACATTGATGTTGAGACCAATACTCCAAATGGATCACAATTTGAACCCAAGCAACGGAAATATACATTCACTGATCTTGCTAAGATCACCAACAACTTCACTAGAATTCTTGGTAAAGGTGGATTTGGAGAAGTTTATCATGGATTTATTGATGACACTCAAGTAGCTGTAAAGATGCTTTCTCCATCAGCAGTACGAGGATATGAACAATTTCTAGCTGAGGTTAAACTTCTGATGAGAGTTCATCACAGAAATTTGACTTCTCTTGTTGGGTATTGCAATGAAGAAAACAATATAGGGCTCATGTATGAATATATGGCAAATGGAAATCTTGATGAAATTCTTTCAGGAAAAAATAGCAGGGTAAAGTTCTTGACATGGGAAGACAGACTCCGAATAGCACTGGATGCAGCCCAAGGACTGGAATATCTGCATAACGGTTGTAAGCCTCCAATAATCCACAGAGATGTGAAATGTGCAAATATTTTATTAAATGAAAACTTCCACGCAAAATTGGCTGATTTTGGGCTATCCAAAAGCATTCCCACAGATGGGGGCAAACAAGTGTACACTGTTGTTGCTGGAACTCCCGGTTATTTGGATCCTGAGTACGGCACATCAAGCATGTTGACAGAGAAAAGTGACGTTTACAGCTTTGGGGTTGTTCTTTTGGAGATGGTGACTGGCGAGCCAGCAATTGCAAAAACGCCTGAGAAGACTCACATAAGTCAATGGGTTAGCTCCATGCTTTCTAATGGGGATATAAAAAATATTGCTGACTCAAGGTTTCAGGAAGATTTTGACACTGGCTCAGTCTGGAAAGTTGTTGAAATAGGAATGGCTTCTGTGTCCACTAGTTCTGCCAAAAGGCCAAGTATGAGCGATATAGTGAACGAGTTAAAGGAGTGTTTGAAGACAGAATTAGCTCGAAAATATAGTGGTCGTGACACTGAAAACAATGACTCAATTGAGTTGGTCACTCTGAATTTCACAACTGAACTTGGTCCCCCAGCTAGGTAG	2703	0.3999	MMGMLLQLPYVLFGVLTAVVLVPAQEDQSGFISIDCGLPEASSYTEKTTGIFYISDAQFIDTGVSKSTSPAEKSTHQQQLAYVRSFPSGVRNCYRINVTSDTKYLIRASFFYGNYDGLNQPPQFDLHLGPNLWDTVKFNKNASLSTTSDIIYTPSLDYIHPCLVNTGKGTPFISAIELRTLSNASYVTDSAESLACIQRYDLGSITNLEYRYKDDVYDRIWEPRGINKGTQLSSTLNSGDLLYLDYYKPPEVVMSTAAAPVNASAPLEFYWDPDNVNEQFYIYMYFSEVEILAANETRTFNILMNGKLLYGPLAPVYQVATTILTDSALTGATRYLFSLVKTEISTLPPIINAVEIYKVIDFPQSETEQDDVDTMTNIKNAYGVDRNWEGDPCGPVAYIWEGLNCSYDGNNTRRITSLNLSSSGLTGQISFFISELTMLQYLDLSNNSLTGSVPDFLTQLQSLKVLNLGNNNLIGPIPRGLVERSKEGSLSLSLGQNPNLCESDPCIQQTNNKQPDADHQKNKNNIVIPLVASVAGILVLLIIVAAAIICGPKKRKPQASVNIDVETNTPNGSQFEPKQRKYTFTDLAKITNNFTRILGKGGFGEVYHGFIDDTQVAVKMLSPSAVRGYEQFLAEVKLLMRVHHRNLTSLVGYCNEENNIGLMYEYMANGNLDEILSGKNSRVKFLTWEDRLRIALDAAQGLEYLHNGCKPPIIHRDVKCANILLNENFHAKLADFGLSKSIPTDGGKQVYTVVAGTPGYLDPEYGTSSMLTEKSDVYSFGVVLLEMVTGEPAIAKTPEKTHISQWVSSMLSNGDIKNIADSRFQEDFDTGSVWKVVEIGMASVSTSSAKRPSMSDIVNELKECLKTELARKYSGRDTENNDSIELVTLNFTTELGPPAR	900

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g01378	900	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	667	873	-	-
	Pumo7g01378	900	FunFam	Leucine-rich repeat receptor-like kinase	370	503	-	-
	Pumo7g01378	900	PANTHER	OS07G0107800 PROTEIN-RELATED	32	865	-	-
	Pumo7g01378	900	Gene3D	Transferase(Phosphotransferase) domain 1	667	886	-	-
	Pumo7g01378	900	Pfam	Leucine Rich repeats (2 copies)	437	477	IPR025875	-
	Pumo7g01378	900	SUPERFAMILY	Protein kinase-like (PK-like)	573	861	IPR011009	-
	Pumo7g01378	900	Gene3D	Phosphorylase Kinase; domain 1	579	666	-	-
	Pumo7g01378	900	ProSiteProfiles	Protein kinase domain profile.	592	865	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo7g01378	900	PRINTS	Leucine-rich repeat signature	460	473	-	-
	Pumo7g01378	900	PRINTS	Leucine-rich repeat signature	439	452	-	-
	Pumo7g01378	900	ProSitePatterns	Protein kinases ATP-binding region signature.	598	619	IPR017441	GO:0005524
	Pumo7g01378	900	SUPERFAMILY	L domain-like	370	482	-	-
	Pumo7g01378	900	Pfam	Protein tyrosine and serine/threonine kinase	594	861	IPR001245	GO:0004672\|GO:0006468
	Pumo7g01378	900	SMART	serkin_6	592	865	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo7g01378	900	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	713	725	IPR008271	GO:0004672\|GO:0006468
	Pumo7g01378	900	ProSiteProfiles	Leucine-rich repeat profile.	438	460	IPR001611	GO:0005515
	Pumo7g01378	900	Gene3D	Ribonuclease Inhibitor	372	494	IPR032675	-
	Pumo7g01378	900	FunFam	Leucine-rich repeat receptor-like protein kinase	569	666	-	-
	Pumo7g01378	900	Pfam	Malectin-like domain	34	359	IPR024788	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g01378	Pumo-Chr7	34218401	34223142	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g01378	11	900	Receptor kinase-like Gene Family	AT1G51800	49.282	0.0	843

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Pumo7g01378		Malectin_like	1.8e-108	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g01378	-		-	gmx:100779474	1480.31