Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01370 ATGGATTTTGATCCAAGCTTCCAAGTGCCACAATACCTTTCAAGCCTTTTTCCTGGAAATCCCTGCTTGATGTCACAGACTCAAACACTGTTTCCATCACAAAGCTCTATTCTCGTTCCACCATCACCACCACCTATCATGTTTCCCCCCAACAACACTTTCCACCATTTTCAAGATCCCATCGTGAATGTGCCTACCCACAACCCTCCCTTTGTGATGGAGGGTCCTTCCAATCCCATCACCACCCCTATGTATGGGATACTGACCCCTTCTTTGGGTGATGGATCTTCCCTAGGTGGCTCTATTAACGTTCACCATCACCACCTTGTGACGTTAGCATCAAACAACAACAAAATGGAGGCTTTGTATGGCTACCACAAAAGCAAAGTCATATGGGATTTTTCACAAAAAACCATGATTCATCCATCTGAAGCTTCTTCTTCCAAGTCACCAGCACCTTTTTCTCTCTCTAATAATTATGGACAAGGGATGAGTGAATATCACTGCTACACTGATCGGAAGGTAAATATGAAAAAGGATACCAACATTGCTAATGATAACATAGTCAAAGGGCACTGGACTCCAGAAGAAGACAGTACTCTTGTGGAATTGGTGAATCAATTTGGGCAAAAGAAATGGTCGAAAATCGCAAAGTCATTGCACGGCAGGATTGGGAAGCAGTGTAGGGAAAGATGGCACAACCATCTCCGACCAAACATTAGGAAGGACTCATGGACAGTGGTGGAAGACATGATTTTAATCGAAGCCCATAGGGATGTTGGAAACAAGTGGTCAGAGATCGCAAAGAGGTTTCCAGATAGGACTGCGAACAACATCAAGAATCGTTGGAATGGCACCAAGCGGTTTAAGAACTGCAAGAGGCACAACAAAAACAAGCACAACCCTTATGAAGGATCAATGCTCCATGCCTACATTAAAAGTGTCGCTGCTAATGAAGAAGCTGCAAAAGTGCTAAAGAAATCCATAAGTAAGAAGAATAAGAAGGTTGTTGAGATGCCAAAGGGTGCCTAG 1032 0.436 MDFDPSFQVPQYLSSLFPGNPCLMSQTQTLFPSQSSILVPPSPPPIMFPPNNTFHHFQDPIVNVPTHNPPFVMEGPSNPITTPMYGILTPSLGDGSSLGGSINVHHHHLVTLASNNNKMEALYGYHKSKVIWDFSQKTMIHPSEASSSKSPAPFSLSNNYGQGMSEYHCYTDRKVNMKKDTNIANDNIVKGHWTPEEDSTLVELVNQFGQKKWSKIAKSLHGRIGKQCRERWHNHLRPNIRKDSWTVVEDMILIEAHRDVGNKWSEIAKRFPDRTANNIKNRWNGTKRFKNCKRHNKNKHNPYEGSMLHAYIKSVAANEEAAKVLKKSISKKNKKVVEMPKGA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01370 343 Gene3D - 189 241 - -
Pumo7g01370 343 Pfam Myb-like DNA-binding domain 242 284 IPR001005 -
Pumo7g01370 343 Pfam Myb-like DNA-binding domain 190 236 IPR001005 -
Pumo7g01370 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Pumo7g01370 343 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Pumo7g01370 343 Gene3D - 244 307 - -
Pumo7g01370 343 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
Pumo7g01370 343 SMART sant 241 289 IPR001005 -
Pumo7g01370 343 SMART sant 189 238 IPR001005 -
Pumo7g01370 343 PANTHER MYB PROTEIN-RELATED 159 302 - -
Pumo7g01370 343 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
Pumo7g01370 343 CDD SANT 193 236 IPR001005 -
Pumo7g01370 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
Pumo7g01370 343 CDD SANT 244 284 IPR001005 -
Pumo7g01370 343 FunFam Transcriptional activator Myb isoform A 189 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01370 Pumo-Chr7 34054353 34058218 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01370 188 315 MYB Transcription Factor Family AT4G18770 57.812 1.02e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo7g01370 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01370 K09422 - gmx:102666249 404.06