Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01367 ATGCAACGAAATCATGATTCCGTGAAAAGGAAGGACTCATGGACCGTGGTGGAAGACATGATTTTGATTGAAGCCCATAGGGAAGTTGGAAACAAGTGGGCAAAGATTGCAAAGAGGTTGTCGGATAGGACTGAGAACACCATCAAGAATCGTTGGAATAGCATCAAGCGGCGTAAGAACTGCAAGAGCCATAACAAGAACAAGCACACCACTTATGAAGGGTCAGTGCTCCATGCTTACGTTAAAAGGTCACTGCTAAGGAAGAAGTTGCAAAAGTGCTCAAGAAATCCATAA 294 0.4388 MQRNHDSVKRKDSWTVVEDMILIEAHREVGNKWAKIAKRLSDRTENTIKNRWNSIKRRKNCKSHNKNKHTTYEGSVLHAYVKRSLLRKKLQKCSRNP 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01367 97 CDD SANT 13 56 IPR001005 -
Pumo7g01367 97 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Pumo7g01367 97 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Pumo7g01367 97 SMART sant 10 58 IPR001005 -
Pumo7g01367 97 Gene3D - 13 80 - -
Pumo7g01367 97 ProSiteProfiles Myb-like domain profile. 6 56 IPR001005 -
Pumo7g01367 97 PANTHER MYB PROTEIN-RELATED 10 70 - -
Pumo7g01367 97 Pfam Myb-like DNA-binding domain 11 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01367 Pumo-Chr7 34023206 34023710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01367 10 82 MYB Transcription Factor Family AT4G18770 50.685 3.38e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo7g01367 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01367 K09422 - ccaj:109801641 116.701