Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01333 ATGCTGAGCCGCGCGTCGAATGTTGAAGTGGTTGGTTCGGGGGAGAGTGAAGATGCGCTGTATGAGCAGCTGTGGAAGGCTTGCGCAGGACCACTGGTGGATGTTCCTTGTGTTGGACAGAGAGTGTTCTACTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAACTGAATCAGAGGATTCCTTTGCTGAAGCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGACGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACAAACGCTGATCCATGCACTGCTGAACCTGCAAGGGCACCGGTTTTCTCGTTCAGCAAGGTCTTGACTGCTTCAGATACCAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACGGAATGCCTTCCTGCATTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGTGAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACTTGCTCACGACTGGCTGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGGACAATGGGGAATTACGTGTTGGAGTGAGACGTCTAGCTCGTCAGGCAAGTAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTCGTAGTATATTACAAGCCAAGGACGAGCCAGTTCATCGTAGGCGTGGACAAGTATTTGGAGGCTATGAACAACAAGTTTAGTGTTGGCATCAGGTTCAGGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAAAATGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAGATAGAACCCTTCGTTGCTTCTGCTTCTACACCCTCAGTTCAACCTACTATGGTAAAGACTAAAAGGCCACGACCGACCAGCGAAACTCCAGATGTTGACACAACATCTGCTGCTTCTGTTTTCTGGGATGCTGGTCCGCCACAGGCTGATATGACACAAAAAAATGTTTTGGCCGAAAGCAAATGGAATGACAATACTGTTGTCCGTCTCATTTGTTTCAGGACTGCAACAGATGATAGCAAGAGTGTCTCAGCTTGGCCTGTTTCAAAGCCTCACGTATCCAGATTGAACAATGATCATGCGCTTGACCAAGTTGACAAGGAGGGCAAAGTCGAGATTGCTACAAGTTATCGGTTGTTTGGAATTGACCTTATTGATCATTCTAGGAACTCTCCTGCTGTAGAGAAGGCATCTGCACAAGCAGCAAATGTACCCAAAGTTACTACTGACGGCTGTGCCAGCACCGTGTCCCGCACCGATGCTGGCCATAAGTCGGATGTACCGAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTATCAACTAAGGAGACTCAGAGCAAGCAAATTTGTAGAAGCCGCACCAAGGGACAGCTACAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTTGGAGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTGTGGAAGCAAACTGCCAATCTCCTCAGTGGAAGATGGGACCGTAATAAGCTCAGACACAACTGAAACCTGA 1869 0.4735 MLSRASNVEVVGSGESEDALYEQLWKACAGPLVDVPCVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTNADPCTAEPARAPVFSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVVKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVGVDKYLEAMNNKFSVGIRFRMRFEGDDSAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDENAAVPRPERVSPWEIEPFVASASTPSVQPTMVKTKRPRPTSETPDVDTTSAASVFWDAGPPQADMTQKNVLAESKWNDNTVVRLICFRTATDDSKSVSAWPVSKPHVSRLNNDHALDQVDKEGKVEIATSYRLFGIDLIDHSRNSPAVEKASAQAANVPKVTTDGCASTVSRTDAGHKSDVPKASSKERKQEQQQVSTKETQSKQICRSRTKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSCGSKLPISSVEDGTVISSDTTET 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01333 622 CDD B3_DNA 123 225 IPR003340 GO:0003677
Pumo7g01333 622 SMART B3_2 125 227 IPR003340 GO:0003677
Pumo7g01333 622 Gene3D - 286 361 - -
Pumo7g01333 622 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 599 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo7g01333 622 FunFam Auxin response factor 286 359 - -
Pumo7g01333 622 FunFam Auxin response factor 123 227 - -
Pumo7g01333 622 Pfam AUX/IAA family 532 595 IPR033389 -
Pumo7g01333 622 MobiDBLite consensus disorder prediction 533 548 - -
Pumo7g01333 622 MobiDBLite consensus disorder prediction 488 512 - -
Pumo7g01333 622 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Pumo7g01333 622 ProSiteProfiles PB1 domain profile. 493 592 IPR000270 GO:0005515
Pumo7g01333 622 SUPERFAMILY DNA-binding pseudobarrel domain 115 254 IPR015300 -
Pumo7g01333 622 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Pumo7g01333 622 Pfam Auxin response factor 251 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo7g01333 622 Gene3D - 122 226 IPR015300 -
Pumo7g01333 622 Gene3D - 526 599 - -
Pumo7g01333 622 MobiDBLite consensus disorder prediction 513 532 - -
Pumo7g01333 622 MobiDBLite consensus disorder prediction 488 548 - -
Pumo7g01333 622 MobiDBLite consensus disorder prediction 363 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01333 Pumo-Chr7 33020511 33024337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01333 18 604 B3 DNA Binding Superfamily AT4G23980 57.711 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo7g01333 B3 5.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01333 K14486 - gmx:100803911 1103.58