Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01311 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGTACTCTTTGAGCTCTACTAGTCTTGGTTCATCACCAACAAACCCTTCCTATGGTGACTCATGGGAGGAGCAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCATGACCTTGAAACTCAGCCTCATAAGCCAGTTCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATATCCCTCTCCTGTTTGTGGATTGGCCTATAAAAAAACTAACCCTAATTCTGATCTTGATTTTGCTGCTTCACCTTCTTCATCATCACCCTCACCTTCCAAGGCCTTGTTGGCTCCACCAGTTAATATTGGTAGCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTCCTGCCAGTAATTCTTCTGAATCATGGCCAAATTTACCCGAAGATCAGAGATTATATTCATGTAAGTTCCACCTTGAAGCTGATACTAAGAAACCTTCCAAGGGAAAAATAATGGATTCTAGGTGTAGGGGTAATAAGGGGGATAAAGATGATGATATTGATGAGGATATGAAATTGAATTCAGTTGTGTATAAAACTCAACCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATGTAATTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTATCCCCAAAGTCAAGCTCAGTTGATAGACATCACGTGCAGCCAAAGATGTTTGAGTTTAGCCCTAGCTCAATGGAAGAGCTAGATCTGGAGCTAAGGCTTGGTAACAGGTCCAAGGTATAG 954 0.4203 MEQGQCWTKRKYSLSSTSLGSSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLETQPHKPVQSSFASLGGYLYPSPVCGLAYKKTNPNSDLDFAASPSSSSPSPSKALLAPPVNIGSFREETMIPLYDSSILHKISPASNSSESWPNLPEDQRLYSCKFHLEADTKKPSKGKIMDSRCRGNKGDKDDDIDEDMKLNSVVYKTQPSLQFESTKEPDHVICKKRKTDASSTLLSPKSSSVDRHHVQPKMFEFSPSSMEELDLELRLGNRSKV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01311 317 Gene3D Classic Zinc Finger 52 106 - -
Pumo7g01311 317 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Pumo7g01311 317 MobiDBLite consensus disorder prediction 1 31 - -
Pumo7g01311 317 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Pumo7g01311 317 MobiDBLite consensus disorder prediction 215 237 - -
Pumo7g01311 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Pumo7g01311 317 SMART c2h2final6 55 77 IPR013087 -
Pumo7g01311 317 MobiDBLite consensus disorder prediction 271 297 - -
Pumo7g01311 317 PANTHER OS07G0101800 PROTEIN 27 314 - -
Pumo7g01311 317 Pfam C2H2-type zinc finger 55 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01311 Pumo-Chr7 32393099 32394052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01311 1 91 C2H2 Transcription Factor Family AT5G06070 57.732 9.60e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo7g01311 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01311 - - gmx:100801427 525.398