Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01292 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGTACTCTTTGAGCTCTACTAGTCTTGGTTCATCACCAACAAACCCTTCCTATGGTGACTCGTGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCATGACCTTGAAATTCAGCCTCATAAGCCAGTTCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATATCCCTCTCCTGTTTGTGGATTGGCCTATAAAAAAACTAACCCTAATTCTGATCTTGATTTTGCTGCTTCACCTTCTTCATCATCACCCTCACCTTCCAAGGCCTTGTTGGCTCCACCAGTTAATATTGGTAGCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTCCTGCCAGTAATTCTTCTGAATCATGGCCAAATTTAGCTGAAGATCAGAGATTATATTCATGTAAGTTCCACCTTGAAGCTGATACTAAGAAACCTTCCAAGGGAAAAATAATGGATTCTAGGTGTAGGGGTAATAAGGGGGATAAAGATGATGATATTGATGAGGATATGAAATTGAATTCAGTTGTGTATAAAACTCAACCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATGTAATTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTATCCCCAAAGTCAAGCTCAGTTGATAGACATCACGTGCAGCCAAAGATGTTTGAGTTTAGCCCTAGCTCAATGGAAGAGCTAGATCTGGAGCTAAGGCTTGGTAACAGGTCCAAGGTATAG 954 0.4172 MEQGQCWTKRKYSLSSTSLGSSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLEIQPHKPVQSSFASLGGYLYPSPVCGLAYKKTNPNSDLDFAASPSSSSPSPSKALLAPPVNIGSFREETMIPLYDSSILHKISPASNSSESWPNLAEDQRLYSCKFHLEADTKKPSKGKIMDSRCRGNKGDKDDDIDEDMKLNSVVYKTQPSLQFESTKEPDHVICKKRKTDASSTLLSPKSSSVDRHHVQPKMFEFSPSSMEELDLELRLGNRSKV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01292 317 PANTHER OS07G0101800 PROTEIN 27 314 - -
Pumo7g01292 317 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Pumo7g01292 317 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Pumo7g01292 317 Gene3D Classic Zinc Finger 52 103 - -
Pumo7g01292 317 MobiDBLite consensus disorder prediction 215 237 - -
Pumo7g01292 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Pumo7g01292 317 SMART c2h2final6 55 77 IPR013087 -
Pumo7g01292 317 MobiDBLite consensus disorder prediction 1 30 - -
Pumo7g01292 317 MobiDBLite consensus disorder prediction 270 297 - -
Pumo7g01292 317 Pfam C2H2-type zinc finger 55 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01292 Pumo-Chr7 31617035 31617988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01292 31 86 C2H2 Transcription Factor Family AT2G37740 82.143 5.66e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo7g01292 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01292 - - gmx:100801427 525.013