Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01253 ATGGATTCAAAACACATGCCAAACTTGAACGACGTCATTAAGAAGACCAAAGGTATGCTGAAGATTGAGATCAAGAAGATGAGCAATGAGCGTAACCTTCGGGTAACATTCTCGAAGCGTTGCACTAGGGTTTTCAAGAATGCTACTAAGCTTGCCACCCTTTATGGTGTGGACCTTGTTGTGATTGTATTCTTACCTGGTAATCGGATTTTTTCCTTTAGTAGCCCCAATGTAAATTCCATTTTCTTACGCTATATGCATAGGCCACACAACCCTTTTAAGCCTGAACCTCAACGAGCCCCACTGTACCGTGGACTAGTATGA 324 0.4259 MDSKHMPNLNDVIKKTKGMLKIEIKKMSNERNLRVTFSKRCTRVFKNATKLATLYGVDLVVIVFLPGNRIFSFSSPNVNSIFLRYMHRPHNPFKPEPQRAPLYRGLV 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01253 107 PANTHER MADS BOX PROTEIN 21 87 - -
Pumo7g01253 107 Gene3D - 29 93 IPR036879 GO:0003677|GO:0046983
Pumo7g01253 107 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo7g01253 107 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo7g01253 107 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo7g01253 107 SUPERFAMILY SRF-like 20 91 IPR036879 GO:0003677|GO:0046983
Pumo7g01253 107 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo7g01253 107 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo7g01253 107 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01253 Pumo-Chr7 29668503 29668826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01253 12 95 Type I MADS-box Gene Family AT5G60440 48.810 3.72e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g01253 SRF-TF 8.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01253 - - gmx:100805200 115.931