Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01252 ATGGATTCAAAACACATGCCAAACTTGAACGACGTCATTAAGAAGACCAAAGGTATGCTGAAGATTGAGATCAAGAAGATGAGCAATGAGCGTAACCTTCGGGTAACATTCTCGAAGCGTTGCACTAGGGTTTTCAAGAATGCTACTAAGCTTGCCACCCTTTATGGTGTGGACCTTGTTGTGATTGTATTCTTACCTGGTAGCCGGATTTTTTCCTTTAGTTGCCCCAATGTAAATTCCATTTTCTTACGCTATATGCGTAGGCCACACAACCCTTTTCAGCCCGAACCTTAA 294 0.4252 MDSKHMPNLNDVIKKTKGMLKIEIKKMSNERNLRVTFSKRCTRVFKNATKLATLYGVDLVVIVFLPGSRIFSFSCPNVNSIFLRYMRRPHNPFQPEP 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01252 97 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo7g01252 97 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo7g01252 97 Gene3D - 29 92 IPR036879 GO:0003677|GO:0046983
Pumo7g01252 97 PANTHER MADS BOX PROTEIN 21 86 - -
Pumo7g01252 97 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo7g01252 97 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo7g01252 97 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo7g01252 97 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo7g01252 97 SUPERFAMILY SRF-like 20 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01252 Pumo-Chr7 29654781 29655074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01252 12 95 Type I MADS-box Gene Family AT5G60440 48.810 6.21e-22 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g01252 SRF-TF 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01252 - - gmx:100805200 112.079