Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01251 ATGAGCATTGAGGTTAACCTTTGGGTAACATTCTCGAAGCGTCGCACTAGGGTTTTCAAGAATGCTACTGAGCTTGCAACCTTTTATGGAGTGGACCTTGCTTTGATTATATTCTCACCTGGTAAGCGAATTTTCTCCTTTAGTAGCCCTAATGTGGATCCATTTTCTTACGCTATCTGGCACAGGCCCAACCACCACTTTTCAGCCCGAACCTCAACAAGCCTTATTGCTCTGTGGATGAGTGTGAGCTCCACATGCACCTCATCCACTTGTCCAACCAGTTCACCACGGAGAAAAAGCTCGAAGAGGATCTAA 315 0.4603 MSIEVNLWVTFSKRRTRVFKNATELATFYGVDLALIIFSPGKRIFSFSSPNVDPFSYAIWHRPNHHFSARTSTSLIALWMSVSSTCTSSTCPTSSPRRKSSKRI 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01251 104 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Pumo7g01251 104 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Pumo7g01251 104 MobiDBLite consensus disorder prediction 85 104 - -
Pumo7g01251 104 PANTHER MADS BOX PROTEIN 4 53 - -
Pumo7g01251 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 47 IPR002100 GO:0003677|GO:0046983
Pumo7g01251 104 SUPERFAMILY SRF-like 6 67 IPR036879 GO:0003677|GO:0046983
Pumo7g01251 104 Gene3D - 4 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01251 Pumo-Chr7 29653954 29654268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01251 1 53 Type I MADS-box Gene Family AT5G60440 56.604 2.88e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g01251 SRF-TF 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01251 - - gmx:102670371 78.9517