Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01245 ATGAACAAGAAGTCTCTGGCGTTTGTTGTCACCACCATTTCCACAAGGTTCCACGTTCCTCCTCCTCAAACTCAACGTCGATTCTACTGTTCTCCGCCCTCTCATCCTTCCTCCAACAAGCTCTTTGTGGGAGGGTTGTCATGGTCAGTGGACGAGAAGTCCCTCAAAGACGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCAAAATGTGCAAAGGATATAATGGATGGAAAGGCACTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGAAATTTGAACAGCAACACTAGGAGGGACTTCAACAACCTTGACAATGAGACTTCAACAATGCTAAGGGTGCCAAAAGATGCTAGAAGGCTCACATGA 495 0.4505 MNKKSLAFVVTTISTRFHVPPPQTQRRFYCSPPSHPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKDIMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGNLNSNTRRDFNNLDNETSTMLRVPKDARRLT 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01245 164 Gene3D - 18 121 IPR012677 -
Pumo7g01245 164 CDD RRM2_NsCP33_like 40 115 - -
Pumo7g01245 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Pumo7g01245 164 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 127 - -
Pumo7g01245 164 SMART rrm1_1 40 113 IPR000504 GO:0003723
Pumo7g01245 164 SUPERFAMILY RNA-binding domain, RBD 18 122 IPR035979 GO:0003676
Pumo7g01245 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01245 Pumo-Chr7 29497666 29504088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01245 37 118 C2H2 Transcription Factor Family AT2G19380 36.585 3.07e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01245 - - gmx:100810104 241.891