Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01232 ATGCCAACGCGACCTCGAGGTTCAAGTAAGTGGGCAGTTATAGGTGGTGTTGTAGGAGCTGTTGTTGTTGTCCTCCTCCTCCTTGCATTGTTTGCACGGAGATGGTCTAGAAAACAAAATTTCAGAGCAGGTGACATATTGGGAGCAACTGAGTTGAAAGTTCCAGTTTACAAGTATAATGATTTAAAAGCTGCAACAAAGAATTTCAGTCATGAAAATAAACTTGGATCGGGGGGTTATGCTGATGTGTACAAGGGTACTCTGAGAGAGGGAAAAGTTGTTGCCATCAAGAAACTAAAGGTAGACAAAATAAAGGAGATGGAGGATGATTTCAAAGGTGAAGTCAAGCTTATGAATAATCTTCATCATCGGAATCTCGTTAGACTTCTTGGTTACTGCAGTGAAGGGGAAGAGAGAATCCTGGTTTATGAGTACATGGCAAATAATAGCCTTGAGAGATTGTTATTTGGTAACGAAAAACGTTCCCTCAATTGGAAAAAACGCTATGATATAATATTAGGCACAGCAATGGGACTGGCCTATTTGCATGAGGAATTGGACATGCTCGTGGTACATAGTGATATAAAGCCTGCTAATATCCTTCTAGATGAAAATTTTCAGCCCAAAATTGCTGATTTTGGGTTAGCAAGGATTTTGCCAGAGGATCATTCTCAACTTCACACAAGAGTTGGAGGAACACGGGGATACATAGCACCTGAGTATCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTGTTGTAGTCCTAGAAATCATCAGTGGCCAAAAGTGTACCTATGAGAAACAACACGAGGATGGTCATGGAAACCTTCTTTATCGAGCATGGAAACTGTATGAGAGAGGCAGGCACTTGGACCTAGTGGACAATGCCATAGACAAAAATGATCATGATGAAGTGGGAAAAATCATAGAAATTGCTTTATTATGCAGTCAGGAACTAACTGCAAGACCAAAAATGTCTGAAGTAGTAGATTTTCTCAAACGCAAGAGCTTACCGAACTACCGGCAACTAGCTACGCCGACGTATTGTCAATCCTAA 1062 0.4096 MPTRPRGSSKWAVIGGVVGAVVVVLLLLALFARRWSRKQNFRAGDILGATELKVPVYKYNDLKAATKNFSHENKLGSGGYADVYKGTLREGKVVAIKKLKVDKIKEMEDDFKGEVKLMNNLHHRNLVRLLGYCSEGEERILVYEYMANNSLERLLFGNEKRSLNWKKRYDIILGTAMGLAYLHEELDMLVVHSDIKPANILLDENFQPKIADFGLARILPEDHSQLHTRVGGTRGYIAPEYQLSEKADTYSYGVVVLEIISGQKCTYEKQHEDGHGNLLYRAWKLYERGRHLDLVDNAIDKNDHDEVGKIIEIALLCSQELTARPKMSEVVDFLKRKSLPNYRQLATPTYCQS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01232 353 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 338 - -
Pumo7g01232 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Pumo7g01232 353 Gene3D Transferase(Phosphotransferase) domain 1 146 345 - -
Pumo7g01232 353 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Pumo7g01232 353 SMART serkin_6 69 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g01232 353 ProSiteProfiles Protein kinase domain profile. 69 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g01232 353 CDD STKc_IRAK 75 336 - -
Pumo7g01232 353 Pfam Protein kinase domain 70 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g01232 353 Gene3D Phosphorylase Kinase; domain 1 45 145 - -
Pumo7g01232 353 FunFam receptor-like serine/threonine-protein kinase NCRK 47 145 - -
Pumo7g01232 353 SUPERFAMILY Protein kinase-like (PK-like) 52 334 IPR011009 -
Pumo7g01232 353 FunFam Cysteine-rich receptor-like protein kinase 2 146 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01232 Pumo-Chr7 28996744 28999129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01232 6 331 Receptor kinase-like Gene Family AT4G05200 43.860 2.29e-82 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo7g01232 Pkinase 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01232 - - vun:114187094 415.616